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Neha J Varghese
Neha J Varghese
DOE Joint Genome Institute
Verified email at lbl.gov
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Cited by
Cited by
Year
IMG/M v. 5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
IMA Chen, K Chu, K Palaniappan, M Pillay, A Ratner, J Huang, ...
Nucleic acids research 47 (D1), D666-D677, 2019
6652019
Microbial species delineation using whole genome sequences
NJ Varghese, S Mukherjee, N Ivanova, KT Konstantinidis, K Mavrommatis, ...
Nucleic acids research 43 (14), 6761-6771, 2015
5942015
IMG 4 version of the integrated microbial genomes comparative analysis system
VM Markowitz, IMA Chen, K Palaniappan, K Chu, E Szeto, M Pillay, ...
Nucleic acids research 42 (D1), D560-D567, 2014
5682014
Protein structure determination using metagenome sequence data
S Ovchinnikov, H Park, N Varghese, PS Huang, GA Pavlopoulos, DE Kim, ...
Science 355 (6322), 294-298, 2017
4582017
IMG/M: integrated genome and metagenome comparative data analysis system
IMA Chen, VM Markowitz, K Chu, K Palaniappan, E Szeto, M Pillay, ...
Nucleic acids research, gkw929, 2016
4352016
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
R Seshadri, SC Leahy, GT Attwood, KH Teh, SC Lambie, AL Cookson, ...
Nature biotechnology 36 (4), 359-367, 2018
3502018
A genomic catalog of Earth’s microbiomes
S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ...
Nature biotechnology 39 (4), 499-509, 2021
3202021
IMG/M 4 version of the integrated metagenome comparative analysis system
VM Markowitz, IMA Chen, K Chu, E Szeto, K Palaniappan, M Pillay, ...
Nucleic acids research 42 (D1), D568-D573, 2014
2842014
The IMG/M data management and analysis system v. 6.0: new tools and advanced capabilities
IMA Chen, K Chu, K Palaniappan, A Ratner, J Huang, M Huntemann, ...
Nucleic acids research 49 (D1), D751-D763, 2021
2422021
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life
S Mukherjee, R Seshadri, NJ Varghese, EA Eloe-Fadrosh, ...
Nature biotechnology 35 (7), 676-683, 2017
2182017
Genome‐based evolutionary history of Pseudomonas spp
C Hesse, F Schulz, CT Bull, BT Shaffer, Q Yan, N Shapiro, KA Hassan, ...
Environmental Microbiology 20 (6), 2142-2159, 2018
1462018
Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato
CW Beukes, M Palmer, P Manyaka, WY Chan, JR Avontuur, E van Zyl, ...
Frontiers in microbiology 8, 1154, 2017
842017
Permanent draft genome of Thiobacillus thioparus DSM 505T, an obligately chemolithoautotrophic member of the Betaproteobacteria
LP Hutt, M Huntemann, A Clum, M Pillay, K Palaniappan, N Varghese, ...
Standards in genomic sciences 12 (1), 1-8, 2017
412017
Complementary metagenomic approaches improve reconstruction of microbial diversity in a forest soil
LV Alteio, F Schulz, R Seshadri, N Varghese, W Rodriguez-Reillo, E Ryan, ...
Msystems 5 (2), e00768-19, 2020
322020
Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom
B Nowinski, CB Smith, CM Thomas, K Esson, R Marin III, CM Preston, ...
Scientific data 6 (1), 129, 2019
312019
DOE JGI metagenome workflow
A Clum, M Huntemann, B Bushnell, B Foster, B Foster, S Roux, PP Hajek, ...
Msystems 6 (3), e00804-20, 2021
302021
Absence of genome reduction in diverse, facultative endohyphal bacteria
DA Baltrus, K Dougherty, KR Arendt, M Huntemann, A Clum, M Pillay, ...
Microbial genomics 3 (2), 2017
282017
Genome sequences for five strains of the emerging pathogen Haemophilus haemolyticus
IK Jordan, AB Conley, IV Antonov, RA Arthur, ED Cook, GP Cooper, ...
Journal of bacteriology 193 (20), 5879-5880, 2011
272011
Genomes of ubiquitous marine and hypersaline Hydrogenovibrio, Thiomicrorhabdus and Thiomicrospira spp. encode a diversity of mechanisms to sustain …
KM Scott, J Williams, CMB Porter, S Russel, TL Harmer, JH Paul, ...
Environmental microbiology 20 (8), 2686-2708, 2018
262018
GlyGly-CTERM and rhombosortase: a C-terminal protein processing signal in a many-to-one pairing with a rhomboid family intramembrane serine protease
DH Haft, N Varghese
PloS one 6 (12), e28886, 2011
252011
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Articles 1–20