Rasmus Hansen Kirkegaard

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Nielsen Per HAalborg University, DenmarkVerificeret mail på bio.aau.dk
Søren M. KarstAalborg UniversityVerificeret mail på bio.aau.dk
Mads AlbertsenAlbertsen lab, Department of Chemistry and Bioscience, Aalborg UniversityVerificeret mail på bio.aau.dk
Holger DaimsProfessor, Department of Microbiology and Ecosystem Science, University of ViennaVerificeret mail på microbial-ecology.net
Simon Jon McIlroyCentre for Microbiome Research, Queensland University of Technology, AustraliaVerificeret mail på qut.edu.au
Craig HerboldSenior Lecturer, School of Biological Sciences, University of CanterburyVerificeret mail på canterbury.ac.nz
Morten Kam Dahl DueholmAssociate Professor, Aalborg UniverstiyVerificeret mail på bio.aau.dk
Petra PjevacStaff Scientist, Joint Microbiome Facility, Medical University of Vienna and University of ViennaVerificeret mail på univie.ac.at
Marta NierychloAalborg UniversityVerificeret mail på bio.aau.dk
Michael WagnerProfessor for Microbial Ecology, University of ViennaVerificeret mail på microbial-ecology.net
Jannie Munk KristensenPostdoc, Department of Chemistry and Bioscience, Aalborg UniversityVerificeret mail på bio.aau.dk
Julia VierheiligTU Wien, Institute for Water Quality and Resource ManagementVerificeret mail på tuwien.ac.at
Thomas Yssing MichaelsenPhD fellow, Aalborg UniversityVerificeret mail på bio.aau.dk
Thomas RatteiProfessor for Computational Biology, University of ViennaVerificeret mail på univie.ac.at
Martin Hjorth AndersenPhD student, Aalborg UniversityVerificeret mail på bio.aau.dk
Anne DaebelerInstitute of Soil Biology and Biogeochemistry, Biology Centre CAS, Ceske Budejovice, CzechiaVerificeret mail på bc.cas.cz
Liping HaoAalborg UniversityVerificeret mail på bio.aau.dk
Christopher J. SedlacekPostdoctoral Researcher at The University of Vienna (Division of Microbial Ecology)Verificeret mail på microbial-ecology.net
Martin von BergenHelmholtz Centre for Environmental Research, Prof Systems Microbiology, Aalborg UniversityVerificeret mail på ufz.de
Nico JehmlichHelmholtz-Centre for Environmental Research - UFZ GmbHVerificeret mail på ufz.de

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Rasmus Hansen Kirkegaard

Staff scientist at Aalborg University

Verificeret mail på bio.aau.dk

Biotechnology bioinformatics molecular biology


Titel Sortér efter henvisninger Sortér efter årstal Sortér efter titel	Citeret af Citeret af	År
Complete nitrification by Nitrospira bacteria H Daims, EV Lebedeva, P Pjevac, P Han, C Herbold, M Albertsen, ... Nature 528 (7583), 504-509, 2015	2330	2015
Back to Basics – The Influence of DNA Extraction and Primer Choice on Phylogenetic Analysis of Activated Sludge Communities PHN Mads Albertsen , Søren M. Karst , Anja S. Ziegler , Rasmus H. Kirkegaard PLoS ONE 10 (7), e0132783, 2015	539	2015
ampvis2: an R package to analyse and visualise 16S rRNA amplicon data KSS Andersen, RH Kirkegaard, SM Karst, M Albertsen bioRxiv, 299537, 2018	505	2018
Experimental methods in wastewater treatment M Albertsen, RH Kirkegaard, MS Dueholm, PHÊ Nielsen Experimental Methods in Wastewater Treatment, 2016	369*	2016
High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing SM Karst, RM Ziels, RH Kirkegaard, EA Sørensen, D McDonald, Q Zhu, ... Nature Methods 18 (2), 165-169, 2021	307	2021
Oxford Nanopore R10. 4 long-read sequencing enables the generation of near-finished bacterial genomes from pure cultures and metagenomes without short-read or reference polishing M Sereika, RH Kirkegaard, SM Karst, TY Michaelsen, EA Sørensen, ... Nature methods 19 (7), 823-826, 2022	258	2022
Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing CM Singleton, F Petriglieri, JM Kristensen, RH Kirkegaard, TY Michaelsen, ... Nature Communications 12 (1), 1-13, 2021	225*	2021
Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias SM Karst, MS Dueholm, SJ McIlroy, RH Kirkegaard, PH Nielsen, ... Nature biotechnology, 2018	193	2018
Culture-Independent Analyses Reveal Novel Anaerolineaceae as Abundant Primary Fermenters in Anaerobic Digesters Treating Waste Activated Sludge SJ McIlroy, RH Kirkegaard, MS Dueholm, E Fernando, SM Karst, ... Frontiers in Microbiology 8, 1134, 2017	178	2017
The impact of immigration on microbial community composition in full-scale anaerobic digesters RH Kirkegaard, SJ McIlroy, JM Kristensen, M Nierychlo, SM Karst, ... Scientific Reports 7 (1), 9343, 2017	177	2017
MiDAS 2.0: an ecosystem-specific taxonomy and online database for the organisms of wastewater treatment systems expanded for anaerobic digester groups SJ McIlroy, RH Kirkegaard, B McIlroy, M Nierychlo, JM Kristensen, ... Database 2017, bax016, 2017	173	2017
Novel syntrophic bacteria in full-scale anaerobic digesters revealed by genome-centric metatranscriptomics L Hao, TY Michaelsen, CM Singleton, G Dottorini, RH Kirkegaard, ... The ISME Journal 14 (4), 906-918, 2020	126	2020
Characterization of the First “Candidatus Nitrotoga” Isolate Reveals Metabolic Versatility and Separate Evolution of Widespread Nitrite-Oxidizing Bacteria K Kitzinger, H Koch, S Lücker, CJ Sedlacek, C Herbold, J Schwarz, ... MBio 9 (4), 10.1128/mbio. 01186-18, 2018	109	2018
Cultivation and genomic analysis of “Candidatus Nitrosocaldus islandicus,” an obligately thermophilic, ammonia-oxidizing thaumarchaeon from a hot spring biofilm in Graendalur … A Daebeler, CW Herbold, J Vierheilig, CJ Sedlacek, P Pjevac, ... Frontiers in microbiology 9, 341907, 2018	93	2018
Integrative microbial community analysis reveals full-scale enhanced biological phosphorus removal under tropical conditions Y Law, RH Kirkegaard, AA Cokro, X Liu, K Arumugam, C Xie, ... Scientific Reports 6 (1), 25719, 2016	85	2016
mmgenome: a toolbox for reproducible genome extraction from metagenomes SM Karst, RH Kirkegaard, M Albertsen bioRxiv, 059121, 2016	78	2016
Genomic and in situ investigations of the novel uncultured Chloroflexi associated with 0092 morphotype filamentous bulking in activated sludge SJ McIlroy, SM Karst, M Nierychlo, MS Dueholm, M Albertsen, ... The ISME journal 10 (9), 2223-2234, 2016	70	2016
Characterizing the growing microorganisms at species level in 46 anaerobic digesters at Danish wastewater treatment plants: A six-year survey on microbial community structure … C Jiang, M Peces, MH Andersen, S Kucheryavskiy, M Nierychlo, ... Water Research 193, 116871, 2021	67	2021
Novel prosthecate bacteria from the candidate phylum Acetothermia L Hao, SJ McIlroy, RH Kirkegaard, SM Karst, WEY Fernando, H Aslan, ... The ISME journal 12 (9), 2225-2237, 2018	61	2018
Characterization of the first “Candidatus Nitrotoga” isolate reveals metabolic versatility and separate evolution of widespread nitrite-oxidizing bacteria. mBio 9: e01186-18 K Kitzinger, H Koch, S Lücker, CJ Sedlacek, C Herbold, J Schwarz, ... Klotz, MG, Arp, DJ, Chain, PS, El-Sheikh, AF, Hauser, LJ, Hommes, NG, et al …, 2018	60	2018

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