Rasmus Hansen Kirkegaard

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Nielsen Per HAalborg University, DenmarkBekræftet mail på bio.aau.dk
Mads AlbertsenAlbertsen lab, Department of Chemistry and Bioscience, Aalborg UniversityBekræftet mail på bio.aau.dk
Søren M. KarstAalborg UniversityBekræftet mail på bio.aau.dk
Morten Kam Dahl DueholmAssociate Professor, Aalborg UniverstiyBekræftet mail på bio.aau.dk
Simon Jon McIlroyCentre for Microbiome Research, Queensland University of Technology, AustraliaBekræftet mail på qut.edu.au
Marta NierychloAalborg UniversityBekræftet mail på bio.aau.dk
Holger DaimsProfessor, Department of Microbiology and Ecosystem Science, University of ViennaBekræftet mail på microbial-ecology.net
Craig HerboldSenior Scientist - Bioinformatic Applications, DMES, University of ViennaBekræftet mail på univie.ac.at
Michael WagnerProfessor for Microbial Ecology, University of ViennaBekræftet mail på microbial-ecology.net
Petra PjevacStaff Scientist, Joint Microbiome Facility, Medical University of Vienna and University of ViennaBekræftet mail på univie.ac.at
Martin von BergenHelmholtz Centre for Environmental Research, Prof Systems Microbiology, Aalborg UniversityBekræftet mail på ufz.de
Thomas RatteiProfessor for Computational Biology, University of ViennaBekræftet mail på univie.ac.at
Nico JehmlichHelmholtz-Centre for Environmental Research - UFZ GmbHBekræftet mail på ufz.de
Ping Han (Penny, 韩平)East China Normal UniversityBekræftet mail på geo.ecnu.edu.cn
Márton PalatinszkyUniversity of ViennaBekræftet mail på microbial-ecology.net
Eustace. Y. FernandoRajarata University of Sri LankaBekræftet mail på as.rjt.ac.lk
Liping HaoAalborg UniversityBekræftet mail på bio.aau.dk
Christopher J. SedlacekPostdoctoral Researcher at The University of Vienna (Division of Microbial Ecology)Bekræftet mail på microbial-ecology.net
Anne DaebelerSoil and Water Research Infrastructure, Biology Centre CAS, Budweis, CzechiaBekræftet mail på bc.cas.cz
Kasper Skytte AndersenPhD fellow, Aalborg UniversityBekræftet mail på bio.aau.dk

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Rasmus Hansen Kirkegaard

Postdoc at Joint Microbiome Facility of the MedUni of Vienna and the University of Vienna

Bekræftet mail på univie.ac.at

Biotechnology bioinformatics and molecular biology


Titel Sortér efter henvisninger Sortér efter årstal Sortér efter titel	Citeret af Citeret af	År
Complete nitrification by Nitrospira bacteria H Daims, EV Lebedeva, P Pjevac, P Han, C Herbold, M Albertsen, ... Nature 528 (7583), 504-509, 2015	1498	2015
Back to Basics – The Influence of DNA Extraction and Primer Choice on Phylogenetic Analysis of Activated Sludge Communities PHN Mads Albertsen , Søren M. Karst , Anja S. Ziegler , Rasmus H. Kirkegaard PLoS ONE 10 (7), e0132783, 2015	403	2015
Experimental methods in wastewater treatment M Albertsen, RH Kirkegaard, MS Dueholm, PHÊ Nielsen Experimental Methods in Wastewater Treatment, 2016	241*	2016
ampvis2: an R package to analyse and visualise 16S rRNA amplicon data KSS Andersen, RH Kirkegaard, SM Karst, M Albertsen bioRxiv, 299537, 2018	225	2018
MiDAS 2.0: an ecosystem-specific taxonomy and online database for the organisms of wastewater treatment systems expanded for anaerobic digester groups SJ McIlroy, RH Kirkegaard, B McIlroy, M Nierychlo, JM Kristensen, ... Database 2017, 2017	139	2017
Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias SM Karst, MS Dueholm, SJ McIlroy, RH Kirkegaard, PH Nielsen, ... Nature biotechnology, 2018	130	2018
The impact of immigration on microbial community composition in full-scale anaerobic digesters RH Kirkegaard, SJ McIlroy, JM Kristensen, M Nierychlo, SM Karst, ... Scientific Reports 7 (1), 9343, 2017	125*	2017
Culture-Independent Analyses Reveal Novel Anaerolineaceae as Abundant Primary Fermenters in Anaerobic Digesters Treating Waste Activated Sludge SJ McIlroy, RH Kirkegaard, MS Dueholm, E Fernando, SM Karst, ... Frontiers in Microbiology 8, 1134, 2017	115	2017
High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing SM Karst, RM Ziels, RH Kirkegaard, EA Sørensen, D McDonald, Q Zhu, ... Nature Methods 18 (2), 165-169, 2021	108*	2021
Characterization of the First “Candidatus Nitrotoga” Isolate Reveals Metabolic Versatility and Separate Evolution of Widespread Nitrite-Oxidizing Bacteria K Kitzinger, H Koch, S Lücker, CJ Sedlacek, C Herbold, J Schwarz, ... MBio 9 (4), e01186-18, 2018	72	2018
Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing CM Singleton, F Petriglieri, JM Kristensen, RH Kirkegaard, TY Michaelsen, ... Nature Communications 12 (1), 1-13, 2021	67*	2021
Cultivation and genomic analysis of “Candidatus Nitrosocaldus islandicus”, an obligately thermophilic, ammonia-oxidizing thaumarchaeon from a hot spring biofilm in Graendalur … A Daebeler, C Herbold, J Vierheilig, CJ Sedlacek, P Pjevac, M Albertsen, ... Frontiers in Microbiology 9, 193, 2018	67	2018
Integrative microbial community analysis reveals full-scale enhanced biological phosphorus removal under tropical conditions Y Law, RH Kirkegaard, AA Cokro, X Liu, K Arumugam, C Xie, ... Scientific reports 6 (1), 1-15, 2016	65	2016
mmgenome: a toolbox for reproducible genome extraction from metagenomes SM Karst, RH Kirkegaard, M Albertsen bioRxiv, 059121, 2016	56	2016
Genomic and in situ investigations of the novel uncultured Chloroflexi associated with 0092 morphotype filamentous bulking in activated sludge SJ McIlroy, SM Karst, M Nierychlo, MS Dueholm, M Albertsen, ... The ISME journal 10 (9), 2223-2234, 2016	46	2016
Genomic insights into members of the candidate phylum Hyd24-12 common in mesophilic anaerobic digesters RH Kirkegaard, MS Dueholm, SJ McIlroy, M Nierychlo, SM Karst, ... The ISME journal 10 (10), 2352-2364, 2016	38	2016
Novel syntrophic bacteria in full-scale anaerobic digesters revealed by genome-centric metatranscriptomics L Hao, TY Michaelsen, CM Singleton, G Dottorini, RH Kirkegaard, ... The ISME Journal 14 (4), 906-918, 2020	35	2020
Novel prosthecate bacteria from the candidate phylum Acetothermia L Hao, SJ McIlroy, RH Kirkegaard, SM Karst, WEY Fernando, H Aslan, ... The ISME journal 12 (9), 2225-2237, 2018	33	2018
Genomic and in situ analyses reveal the Micropruina spp. as abundant fermentative glycogen accumulating organisms in enhanced biological phosphorus removal systems SJ McIlroy, CA Onetto, B McIlroy, FA Herbst, MS Dueholm, RH Kirkegaard, ... Frontiers in microbiology 9, 1004, 2018	26	2018
Characterizing the growing microorganisms at species level in 46 anaerobic digesters at Danish wastewater treatment plants: A six-year survey on microbial community structure … C Jiang, M Peces, MH Andersen, S Kucheryavskiy, M Nierychlo, ... Water Research 193, 116871, 2021	20	2021

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