| Complete nitrification by Nitrospira bacteria H Daims, EV Lebedeva, P Pjevac, P Han, C Herbold, M Albertsen, ... Nature 528 (7583), 504-509, 2015 | 2413 | 2015 |
| Back to Basics – The Influence of DNA Extraction and Primer Choice on Phylogenetic Analysis of Activated Sludge Communities PHN Mads Albertsen , Søren M. Karst , Anja S. Ziegler , Rasmus H. Kirkegaard PLoS ONE 10 (7), e0132783, 2015 | 554 | 2015 |
| ampvis2: an R package to analyse and visualise 16S rRNA amplicon data KSS Andersen, RH Kirkegaard, SM Karst, M Albertsen bioRxiv, 299537, 2018 | 530 | 2018 |
| Experimental methods in wastewater treatment M Albertsen, RH Kirkegaard, MS Dueholm, PHÊ Nielsen Experimental Methods in Wastewater Treatment, 2016 | 378* | 2016 |
| High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing SM Karst, RM Ziels, RH Kirkegaard, EA Sørensen, D McDonald, Q Zhu, ... Nature Methods 18 (2), 165-169, 2021 | 330 | 2021 |
| Oxford Nanopore R10. 4 long-read sequencing enables the generation of near-finished bacterial genomes from pure cultures and metagenomes without short-read or reference polishing M Sereika, RH Kirkegaard, SM Karst, TY Michaelsen, EA Sørensen, ... Nature methods 19 (7), 823-826, 2022 | 293 | 2022 |
| Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing CM Singleton, F Petriglieri, JM Kristensen, RH Kirkegaard, TY Michaelsen, ... Nature Communications 12 (1), 1-13, 2021 | 249* | 2021 |
| Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias SM Karst, MS Dueholm, SJ McIlroy, RH Kirkegaard, PH Nielsen, ... Nature biotechnology, 2018 | 193 | 2018 |
| Culture-Independent Analyses Reveal Novel Anaerolineaceae as Abundant Primary Fermenters in Anaerobic Digesters Treating Waste Activated Sludge SJ McIlroy, RH Kirkegaard, MS Dueholm, E Fernando, SM Karst, ... Frontiers in Microbiology 8, 1134, 2017 | 190 | 2017 |
| The impact of immigration on microbial community composition in full-scale anaerobic digesters RH Kirkegaard, SJ McIlroy, JM Kristensen, M Nierychlo, SM Karst, ... Scientific Reports 7 (1), 9343, 2017 | 182 | 2017 |
| MiDAS 2.0: an ecosystem-specific taxonomy and online database for the organisms of wastewater treatment systems expanded for anaerobic digester groups SJ McIlroy, RH Kirkegaard, B McIlroy, M Nierychlo, JM Kristensen, ... Database 2017, bax016, 2017 | 177 | 2017 |
| Novel syntrophic bacteria in full-scale anaerobic digesters revealed by genome-centric metatranscriptomics L Hao, TY Michaelsen, CM Singleton, G Dottorini, RH Kirkegaard, ... The ISME Journal 14 (4), 906-918, 2020 | 132 | 2020 |
| Characterization of the First “Candidatus Nitrotoga” Isolate Reveals Metabolic Versatility and Separate Evolution of Widespread Nitrite-Oxidizing Bacteria K Kitzinger, H Koch, S Lücker, CJ Sedlacek, C Herbold, J Schwarz, ... MBio 9 (4), 10.1128/mbio. 01186-18, 2018 | 110 | 2018 |
| Cultivation and Genomic Analysis of “Candidatus Nitrosocaldus islandicus,” an Obligately Thermophilic, Ammonia-Oxidizing Thaumarchaeon from a Hot Spring … A Daebeler, CW Herbold, J Vierheilig, CJ Sedlacek, P Pjevac, ... Frontiers in microbiology 9, 193, 2018 | 96 | 2018 |
| Integrative microbial community analysis reveals full-scale enhanced biological phosphorus removal under tropical conditions Y Law, RH Kirkegaard, AA Cokro, X Liu, K Arumugam, C Xie, ... Scientific Reports 6 (1), 25719, 2016 | 86 | 2016 |
| mmgenome: a toolbox for reproducible genome extraction from metagenomes SM Karst, RH Kirkegaard, M Albertsen bioRxiv, 059121, 2016 | 78 | 2016 |
| Genomic and in situ investigations of the novel uncultured Chloroflexi associated with 0092 morphotype filamentous bulking in activated sludge SJ McIlroy, SM Karst, M Nierychlo, MS Dueholm, M Albertsen, ... The ISME journal 10 (9), 2223-2234, 2016 | 74 | 2016 |
| Characterizing the growing microorganisms at species level in 46 anaerobic digesters at Danish wastewater treatment plants: A six-year survey on microbial community structure … C Jiang, M Peces, MH Andersen, S Kucheryavskiy, M Nierychlo, ... Water Research 193, 116871, 2021 | 68 | 2021 |
| Novel prosthecate bacteria from the candidate phylum Acetothermia L Hao, SJ McIlroy, RH Kirkegaard, SM Karst, WEY Fernando, H Aslan, ... The ISME journal 12 (9), 2225-2237, 2018 | 64 | 2018 |
| Characterization of the first “Candidatus Nitrotoga” isolate reveals metabolic versatility and separate evolution of widespread nitrite-oxidizing bacteria. mBio 9: e01186-18 K Kitzinger, H Koch, S Lücker, CJ Sedlacek, C Herbold, J Schwarz, ... Klotz, MG, Arp, DJ, Chain, PS, El-Sheikh, AF, Hauser, LJ, Hommes, NG, et al …, 2018 | 62 | 2018 |
Nielsen Per HAalborg University, DenmarkVerified email at bio.aau.dk
