David J Logan
David J Logan
Computational Biologist at Pfizer Inc
Verified email at
Cited by
Cited by
Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software
L Kamentsky, TR Jones, A Fraser, MA Bray, DJ Logan, KL Madden, ...
Bioinformatics 27 (8), 1179-1180, 2011
Identification of small molecules for human hepatocyte expansion and iPS differentiation
J Shan, RE Schwartz, NT Ross, DJ Logan, D Thomas, SA Duncan, ...
Nature chemical biology 9 (8), 514-520, 2013
Abnormalities in mitochondrial structure in cells from patients with bipolar disorder
AM Cataldo, DL McPhie, NT Lange, S Punzell, S Elmiligy, ZY Nancy, ...
The American journal of pathology 177 (2), 575-585, 2010
A microscale human liver platform that supports the hepatic stages of Plasmodium falciparum and vivax
S March, S Ng, S Velmurugan, A Galstian, J Shan, DJ Logan, ...
Cell host & microbe 14 (1), 104-115, 2013
Niche-based screening identifies small-molecule inhibitors of leukemia stem cells
KA Hartwell, PG Miller, S Mukherjee, AR Kahn, AL Stewart, DJ Logan, ...
Nature chemical biology 9 (12), 840-848, 2013
Neurophysiological and perceptual correlates of navigational impairment in Alzheimer's disease
V Kavcic, R Fernandez, D Logan, CJ Duffy
Brain 129 (3), 736-746, 2006
Aldehyde dehydrogenase 3a2 protects AML cells from oxidative death and the synthetic lethality of ferroptosis inducers
RZ Yusuf, B Saez, A Sharda, N Van Gastel, VWC Yu, N Baryawno, ...
Blood, The Journal of the American Society of Hematology 136 (11), 1303-1316, 2020
Mining for osteogenic surface topographies: In silico design to in vivo osseo-integration
FFB Hulshof, B Papenburg, A Vasilevich, M Hulsman, Y Zhao, M Levers, ...
Biomaterials 137, 49-60, 2017
Cortical area MSTd combines visual cues to represent 3-D self-movement
DJ Logan, CJ Duffy
Cerebral Cortex 16 (10), 1494-1507, 2006
A chemical screen probing the relationship between mitochondrial content and cell size
T Kitami, DJ Logan, J Negri, T Hasaka, NJ Tolliday, AE Carpenter, ...
PloS one 7 (3), e33755, 2012
Cue integration for the perception and control of self-movement in ageing and Alzheimer's disease
M Mapstone, D Logan, CJ Duffy
Brain 129 (11), 2931-2944, 2006
High content image analysis identifies novel regulators of synaptogenesis in a high-throughput RNAi screen of primary neurons
TJF Nieland, DJ Logan, J Saulnier, D Lam, C Johnson, DE Root, ...
PloS one 9 (3), e91744, 2014
Morphology and gene expression profiling provide complementary information for mapping cell state
GP Way, T Natoli, A Adeboye, L Litichevskiy, A Yang, X Lu, JC Caicedo, ...
Cell systems 13 (11), 911-923. e9, 2022
Optimizing the Cell Painting assay for image-based profiling
BA Cimini, SN Chandrasekaran, M Kost-Alimova, L Miller, A Goodale, ...
Nature Protocols, 1-44, 2023
Quantifying co-cultured cell phenotypes in high-throughput using pixel-based classification
DJ Logan, J Shan, SN Bhatia, AE Carpenter
Methods 96, 6-11, 2016
An open-source computational tool to automatically quantify immunolabeled retinal ganglion cells
AC Dordea, MA Bray, K Allen, DJ Logan, F Fei, R Malhotra, MS Gregory, ...
Experimental Eye Research 147, 50-56, 2016
Screening cellular feature measurements for image-based assay development
DJ Logan, AE Carpenter
Journal of biomolecular screening 15 (7), 840-846, 2010
JUMP Cell Painting dataset: morphological impact of 136,000 chemical and genetic perturbations
SN Chandrasekaran, J Ackerman, E Alix, DM Ando, J Arevalo, M Bennion, ...
bioRxiv, 2023.03. 23.534023, 2023
High-throughput platform for identifying molecular factors involved in phenotypic stabilization of primary human hepatocytes in vitro
J Shan, DJ Logan, DE Root, AE Carpenter, SN Bhatia
Journal of biomolecular screening 21 (9), 897-911, 2016
A genome-wide RNAi screen for microtubule bundle formation and lysosome motility regulation in drosophila S2 cells
AL Jolly, CH Luan, BE Dusel, SF Dunne, M Winding, VJ Dixit, C Robins, ...
Cell reports 14 (3), 611-620, 2016
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