Jonathan Doye
Jonathan Doye
Verified email at chem.ox.ac.uk - Homepage
Title
Cited by
Cited by
Year
Global optimization by basin-hopping and the lowest energy structures of Lennard-Jones clusters containing up to 110 atoms
DJ Wales, JPK Doye
The Journal of Physical Chemistry A 101 (28), 5111-5116, 1997
25701997
The effect of the range of the potential on the structures of clusters
JPK Doye, DJ Wales, RS Berry
The Journal of chemical physics 103 (10), 4234-4249, 1995
4431995
Global minima for transition metal clusters described by Sutton–Chen potentials
JPK Doye, DJ Wales
New journal of chemistry 22 (7), 733-744, 1998
4211998
Energy landscapes: from clusters to biomolecules
DJ Wales, JPK Doye, MA Miller, PN Mortenson, TR Walsh
Advances in Chemical Physics 115, 1-112, 2000
3072000
The double-funnel energy landscape of the 38-atom Lennard-Jones cluster
JPK Doye, MA Miller, DJ Wales
The Journal of Chemical Physics 110 (14), 6896-6906, 1999
2951999
The Cambridge cluster database
DJ Wales, JPK Doye, A Dullweber, MP Hodges, FY Naumkin, F Calvo, ...
2772001
Structural consequences of the range of the interatomic potential a menagerie of clusters
JPK Doye, DJ Wales
Journal of the Chemical Society, Faraday Transactions 93 (24), 4233-4243, 1997
2761997
On the biophysics and kinetics of toehold-mediated DNA strand displacement
N Srinivas, TE Ouldridge, P Šulc, JM Schaeffer, B Yurke, AA Louis, ...
Nucleic acids research 41 (22), 10641-10658, 2013
2692013
Structural, mechanical, and thermodynamic properties of a coarse-grained DNA model
TE Ouldridge, AA Louis, JPK Doye
The Journal of chemical physics 134 (8), 02B627, 2011
2662011
Thermodynamics of global optimization
JPK Doye, DJ Wales
Physical review letters 80 (7), 1357, 1998
2631998
Evolution of the potential energy surface with size for Lennard-Jones clusters
JPK Doye, MA Miller, DJ Wales
The Journal of Chemical Physics 111 (18), 8417-8428, 1999
2581999
Network topology of a potential energy landscape: A static scale-free network
JPK Doye
Physical review letters 88 (23), 238701, 2002
2152002
Thermodynamics and the global optimization of Lennard-Jones clusters
JPK Doye, DJ Wales, MA Miller
The Journal of Chemical Physics 109 (19), 8143-8153, 1998
2121998
Tetrahedral global minimum for the 98-atom Lennard-Jones cluster
RH Leary, JPK Doye
Physical Review E 60 (6), R6320, 1999
2031999
Controlling crystallization and its absence: proteins, colloids and patchy models
JPK Doye, AA Louis, IC Lin, LR Allen, EG Noya, AW Wilber, HC Kok, ...
Physical Chemistry Chemical Physics 9 (18), 2197-2205, 2007
1922007
Identifying communities within energy landscapes
CP Massen, JPK Doye
Physical Review E 71 (4), 046101, 2005
1912005
Reversible self-assembly of patchy particles into monodisperse icosahedral clusters
AW Wilber, JPK Doye, AA Louis, EG Noya, MA Miller, P Wong
The Journal of chemical physics 127 (8), 08B618, 2007
1892007
Saddle points and dynamics of Lennard-Jones clusters, solids, and supercooled liquids
JPK Doye, DJ Wales
The Journal of chemical physics 116 (9), 3777-3788, 2002
1812002
Self-similar disk packings as model spatial scale-free networks
JPK Doye, CP Massen
Physical Review E 71 (1), 016128, 2005
1792005
Sequence-dependent thermodynamics of a coarse-grained DNA model
P Šulc, F Romano, TE Ouldridge, L Rovigatti, JPK Doye, AA Louis
The Journal of chemical physics 137 (13), 135101, 2012
1702012
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