A. Murat Eren
A. Murat Eren
Assistant Professor, University of Chicago
Bekræftet mail på uchicago.edu - Startside
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Anvi’o: an advanced analysis and visualization platform for ‘omics data
AM Eren, ÖC Esen, C Quince, JH Vineis, HG Morrison, ML Sogin, ...
PeerJ 3, e1319, 2015
4852015
Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data
AM Eren, L Maignien, WJ Sul, LG Murphy, SL Grim, HG Morrison, ...
Methods in Ecology and Evolution 4 (12), 1111-1119, 2013
4172013
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ...
Nature biotechnology 35 (8), 725-731, 2017
3372017
Minimum entropy decomposition: unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences
AM Eren, HG Morrison, PJ Lescault, J Reveillaud, JH Vineis, ML Sogin
The ISME journal 9 (4), 968-979, 2015
3202015
The gut microbiota of rural papua new guineans: composition, diversity patterns, and ecological processes
I Martínez, JC Stegen, MX Maldonado-Gómez, AM Eren, PM Siba, ...
Cell reports 11 (4), 527-538, 2015
3122015
Oligotyping analysis of the human oral microbiome
AM Eren, GG Borisy, SM Huse, JLM Welch
Proceedings of the National Academy of Sciences 111 (28), E2875-E2884, 2014
1942014
A filtering method to generate high quality short reads using Illumina paired-end technology
AM Eren, JH Vineis, HG Morrison, ML Sogin
PloS one 8 (6), e66643, 2013
1872013
Exploring the diversity of Gardnerella vaginalis in the genitourinary tract microbiota of monogamous couples through subtle nucleotide variation
AM Eren, M Zozaya, CM Taylor, SE Dowd, DH Martin, MJ Ferris
PloS one 6 (10), e26732, 2011
1762011
VAMPS: a website for visualization and analysis of microbial population structures
SM Huse, DBM Welch, A Voorhis, A Shipunova, HG Morrison, AM Eren, ...
BMC bioinformatics 15 (1), 41, 2014
1652014
Host-specificity among abundant and rare taxa in the sponge microbiome
J Reveillaud, L Maignien, AM Eren, JA Huber, A Apprill, ML Sogin, ...
The ISME journal, 2014
1492014
Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes
TO Delmont, C Quince, A Shaiber, ÖC Esen, STM Lee, MS Rappé, ...
Nature Microbiology, 1, 2018
1322018
Extensive modulation of the fecal metagenome in children with Crohn’s disease during exclusive enteral nutrition
C Quince, UZ Ijaz, N Loman, AM Eren, D Saulnier, J Russell, SJ Haig, ...
The American journal of gastroenterology 110 (12), 1718, 2015
1292015
Sewage reflects the microbiomes of human populations
RJ Newton, SL McLellan, DK Dila, JH Vineis, HG Morrison, AM Eren, ...
MBio 6 (2), 2015
1212015
Ecological succession and stochastic variation in the assembly of Arabidopsis thaliana phyllosphere communities
L Maignien, EA DeForce, ME Chafee, AM Eren, SL Simmons
MBio 5 (1), 2014
1192014
Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes
M Bálint, M Bahram, AM Eren, K Faust, JA Fuhrman, B Lindahl, RB O'hara, ...
FEMS microbiology reviews 40 (5), 686-700, 2016
1102016
A single genus in the gut microbiome reflects host preference and specificity
AM Eren, ML Sogin, HG Morrison, JH Vineis, JC Fisher, RJ Newton, ...
The ISME journal 9 (1), 90-100, 2015
1042015
Discovering new indicators of fecal pollution
SL McLellan, AM Eren
Trends in microbiology 22 (12), 697-706, 2014
982014
Sewage reflects the distribution of human faecal Lachnospiraceae
SL McLellan, RJ Newton, JL Vandewalle, OC Shanks, SM Huse, AM Eren, ...
Environmental microbiology 15 (8), 2213-2227, 2013
862013
Humpback whale populations share a core skin bacterial community: towards a health index for marine mammals?
A Apprill, J Robbins, AM Eren, AA Pack, J Reveillaud, D Mattila, M Moore, ...
PLoS One 9 (3), e90785, 2014
792014
Linking pangenomes and metagenomes: the Prochlorococcus metapangenome
TO Delmont, AM Eren
PeerJ 6, e4320, 2018
752018
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Artikler 1–20