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Vicente Acuña
Vicente Acuña
University of Chile, Université de Lyon, INRIA
Verified email at dim.uchile.cl - Homepage
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Cited by
Cited by
Year
Modes and cuts in metabolic networks: Complexity and algorithms
V Acuna, F Chierichetti, V Lacroix, A Marchetti-Spaccamela, MF Sagot, ...
Biosystems 95 (1), 51-60, 2009
1272009
A note on the complexity of finding and enumerating elementary modes
V Acuña, A Marchetti-Spaccamela, MF Sagot, L Stougie
Biosystems 99 (3), 210-214, 2010
642010
Graph-Based Analysis of the Metabolic Exchanges between Two Co-Resident Intracellular Symbionts, Baumannia cicadellinicola and Sulcia muelleri, with Their Insect Host …
L Cottret, PV Milreu, V Acuña, A Marchetti-Spaccamela, L Stougie, ...
PLoS computational biology 6 (9), e1000904, 2010
472010
Algorithms and complexity of enumerating minimal precursor sets in genome-wide metabolic networks
V Acuña, PV Milreu, L Cottret, A Marchetti-Spaccamela, L Stougie, ...
Bioinformatics 28 (19), 2474-2483, 2012
402012
Enumerating precursor sets of target metabolites in a metabolic network
L Cottret, P Vieira Milreu, V Acuña, A Marchetti-Spaccamela, ...
International Workshop on Algorithms in Bioinformatics, 233-244, 2008
382008
Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure
PV Milreu, CC Klein, L Cottret, V Acuña, E Birmelé, M Borassi, C Junot, ...
Bioinformatics 30 (1), 61-70, 2014
282014
Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets
V Acuña, E Birmelé, L Cottret, P Crescenzi, F Jourdan, V Lacroix, ...
Theoretical Computer Science 457, 1-9, 2012
282012
Enumeration of minimal stoichiometric precursor sets in metabolic networks
R Andrade, M Wannagat, CC Klein, V Acuña, A Marchetti-Spaccamela, ...
Algorithms for Molecular Biology 11 (1), 1-15, 2016
242016
Solving the maximum edge biclique packing problem on unbalanced bipartite graphs
V Acuña, CE Ferreira, AS Freire, E Moreno
Discrete Applied Mathematics 164, 2-12, 2014
222014
On bubble generators in directed graphs
V Acuna, R Grossi, GF Italiano, L Lima, R Rizzi, G Sacomoto, MF Sagot, ...
International Workshop on Graph-Theoretic Concepts in Computer Science, 18-31, 2017
72017
Enumerating chemical organisations in consistent metabolic networks: Complexity and algorithms
PV Milreu, V Acuña, E Birmelé, P Crescenzi, A Marchetti-Spaccamela, ...
International Workshop on Algorithms in Bioinformatics, 226-237, 2010
52010
Integration of Biological Networks for Acidithiobacillus thiooxidans Describes a Modular Gene Regulatory Organization of Bioleaching Pathways
MP Cortés, V Acuña, D Travisany, A Siegel, A Maass, M Latorre
Frontiers in Molecular Biosciences 6, 155, 2020
32020
On bubble generators in directed graphs
V Acuña, R Grossi, GF Italiano, L Lima, R Rizzi, G Sacomoto, MF Sagot, ...
Algorithmica 82 (4), 898-914, 2020
22020
Deciphering transcriptional regulations coordinating the response to environmental changes
V Acuña, A Aravena, C Guziolowski, D Eveillard, A Siegel, A Maass
BMC bioinformatics 17 (1), 1-12, 2016
22016
Modeling parsimonious putative regulatory networks: Complexity and heuristic approach
V Acuña, A Aravena, A Maass, A Siegel
International Conference on Verification, Model Checking, and Abstract …, 2014
22014
Metabolic stories: uncovering all possible scenarios for interpreting metabolomics data.
L Stougie, PV Milreu, M Morino, V Acuna, E Birmele, L Cottret, V Lacroix, ...
RECOMB-AB, 2012
22012
The biclique k-clustering problem in bipartite graphs and its application in bioinformatics
V Acuña, CE Ferreira, AS Freire, E Moreno
Electronic Notes in Discrete Mathematics 36, 159-166, 2010
22010
Coding with variable block maps
V Acuña, G Didier, A Maass
Theoretical computer science 369 (1-3), 396-405, 2006
12006
A family of tree-based generators for bubbles in directed graphs
V Acuña, L Lima, GF Italiano, L Pepè Sciarria, MF Sagot, B Sinaimeri
International Workshop on Combinatorial Algorithms, 17-29, 2020
2020
Reproduction matrix for an epidemic and lockdowns in a city
V Acuña, MP Cortés, A Hart, S Martínez, JC Maureira
arXiv preprint arXiv:2005.09556, 2020
2020
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