Martin F Thomsen
Martin F Thomsen
PhD student
Verified email at cbs.dtu.dk
Title
Cited by
Cited by
Year
Seq2Logo: a method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two …
MCF Thomsen, M Nielsen
Nucleic acids research 40 (W1), W281-W287, 2012
2112012
snpTree-a web-server to identify and construct SNP trees from whole genome sequence data
P Leekitcharoenphon, RS Kaas, MCF Thomsen, C Friis, S Rasmussen, ...
BMC genomics 13 (7), S6, 2012
822012
A bacterial analysis platform: an integrated system for analysing bacterial whole genome sequencing data for clinical diagnostics and surveillance
MCF Thomsen, J Ahrenfeldt, JLB Cisneros, V Jurtz, MV Larsen, ...
PloS one 11 (6), 2016
812016
MHCcluster, a method for functional clustering of MHC molecules
M Thomsen, C Lundegaard, S Buus, O Lund, M Nielsen
Immunogenetics 65 (9), 655-665, 2013
502013
MGmapper: reference based mapping and taxonomy annotation of metagenomics sequence reads
TN Petersen, O Lukjancenko, MCF Thomsen, MM Sperotto, O Lund, ...
PloS one 12 (5), 2017
412017
WGS-based surveillance of third-generation cephalosporin-resistant Escherichia coli from bloodstream infections in Denmark
L Roer, F Hansen, MCF Thomsen, JD Knudsen, DS Hansen, M Wang, ...
Journal of Antimicrobial Chemotherapy 72 (7), 1922-1929, 2017
312017
Development of a web tool for Escherichia coli subtyping based on fimH alleles
L Roer, V Tchesnokova, R Allesøe, M Muradova, S Chattopadhyay, ...
Journal of clinical microbiology 55 (8), 2538-2543, 2017
302017
PanFunPro: PAN-genome analysis based on FUNctional PROfiles
O Lukjancenko, MC Thomsen, MV Larsen, DW Ussery
F1000Research 2 (265), 265, 2013
172013
HLA-D specificities evaluated by participating laboratories
J Sachs, RJ Duquesnoy, JA Hansen, B Amos, A Carbonara, D Fradelize, ...
Histocompatibility testing 1980, 268-270, 1980
111980
The CGE tool box
MV Larsen, KG Joensen, E Zankari, J Ahrenfeldt, O Lukjancenko, ...
Applied Genomics of Foodborne Pathogens, 65-90, 2017
72017
RUCS: rapid identification of PCR primers for unique core sequences
MCF Thomsen, H Hasman, H Westh, H Kaya, O Lund
Bioinformatics 33 (24), 3917-3921, 2017
62017
The COMPARE Data Hubs
C Amid, N Pakseresht, N Silvester, S Jayathilaka, O Lund, LD Dynovski, ...
Database 2019, 2019
52019
CHTyper, a Web tool for subtyping of extraintestinal pathogenic Escherichia coli based on the fumC and fimH alleles
L Roer, TB Johannesen, F Hansen, M Stegger, V Tchesnokova, ...
Journal of clinical microbiology 56 (4), e00063-18, 2018
52018
Disk diffusion antimicrobial-susceptibility testing of the Bacteroides fragilis group using EUCAST clinical minimum inhibitory concentration MIC breakpoints
H Luu, MD Thomsen, F Hansen, DM Citron, G Kahlmeter, US Justesen
23rd European Congress of Clinical Microbiology and Infectious Diseases, 2013
32013
Impact of task complexity on driving a gaze‐controlled telerobot
G Zhang, K Minakata, A Alapetite, Z Wang, M Thomsen, JP Hansen
Scandinavian Workshop on Applied Eye Tracking 2018, 2018
22018
JM-010, a new promising safe treatment paradigm for L-DOPA induced dyskinesia: 337
M Thomsen, J Hansen
Movement Disorders 28, 2013
12013
Large scale automated phylogenomic analysis of bacterial isolates and the Evergreen Online platform
J Szarvas, J Ahrenfeldt, JLB Cisneros, MCF Thomsen, FM Aarestrup, ...
Communications Biology 3 (1), 1-10, 2020
2020
PanFunPro: PAN-genome analysis based on FUNctional PROfiles
D Ussery, M Voldby Larsen, MCF Thomsen, O Lukjancenko
F1000Research, 2013
2013
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