| A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology A Rambaut, EC Holmes, Á O’Toole, V Hill, JT McCrone, C Ruis, ... Nature microbiology 5 (11), 1403-1407, 2020 | 2750 | 2020 |
| Assessing transmissibility of SARS-CoV-2 lineage B. 1.1. 7 in England E Volz, S Mishra, M Chand, JC Barrett, R Johnson, L Geidelberg, ... Nature 593 (7858), 266-269, 2021 | 1150 | 2021 |
| Evaluating the effects of SARS-CoV-2 spike mutation D614G on transmissibility and pathogenicity E Volz, V Hill, JT McCrone, A Price, D Jorgensen, Á O’Toole, J Southgate, ... Cell 184 (1), 64-75. e11, 2021 | 1123 | 2021 |
| Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool Á O’Toole, E Scher, A Underwood, B Jackson, V Hill, JT McCrone, ... Virus evolution 7 (2), veab064, 2021 | 970 | 2021 |
| Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B. 1.617. 2) compared with alpha (B. 1.1. 7) variants of concern: a cohort study KA Twohig, T Nyberg, A Zaidi, S Thelwall, MA Sinnathamby, S Aliabadi, ... The Lancet Infectious Diseases 22 (1), 35-42, 2022 | 861 | 2022 |
| Transmission of SARS-CoV-2 Lineage B. 1.1. 7 in England: Insights from linking epidemiological and genetic data E Volz, S Mishra, M Chand, JC Barrett, R Johnson, L Geidelberg, ... MedRxiv, 2020.12. 30.20249034, 2021 | 623 | 2021 |
| Emergence of SARS-CoV-2 omicron lineages BA. 4 and BA. 5 in South Africa H Tegally, M Moir, J Everatt, M Giovanetti, C Scheepers, E Wilkinson, ... Nature medicine 28 (9), 1785-1790, 2022 | 579 | 2022 |
| Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity EC Thomson, LE Rosen, JG Shepherd, R Spreafico, A da Silva Filipe, ... Cell 184 (5), 1171-1187. e20, 2021 | 578 | 2021 |
| Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B. 1.1. 7 B Meng, SA Kemp, G Papa, R Datir, IATM Ferreira, S Marelli, WT Harvey, ... Cell reports 35 (13), 2021 | 445 | 2021 |
| Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK L Du Plessis, JT McCrone, AE Zarebski, V Hill, C Ruis, B Gutierrez, ... Science 371 (6530), 708-712, 2021 | 384 | 2021 |
| Changes in symptomatology, reinfection, and transmissibility associated with the SARS-CoV-2 variant B. 1.1. 7: an ecological study MS Graham, CH Sudre, A May, M Antonelli, B Murray, T Varsavsky, ... The Lancet Public Health 6 (5), e335-e345, 2021 | 366 | 2021 |
| COVID-19 in health-care workers in three hospitals in the south of the Netherlands: a cross-sectional study RS Sikkema, SD Pas, DF Nieuwenhuijse, Á O'Toole, J Verweij, ... The Lancet Infectious Diseases 20 (11), 1273-1280, 2020 | 293 | 2020 |
| Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands BB Oude Munnink, DF Nieuwenhuijse, M Stein, Á O’Toole, M Haverkate, ... Nature Medicine 26 (9), 1405-1410, 2020 | 276 | 2020 |
| Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020 E Alm, EK Broberg, T Connor, EB Hodcroft, AB Komissarov, ... Eurosurveillance 25 (32), 2001410, 2020 | 263 | 2020 |
| Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands BBO Munnink, DF Nieuwenhuijse, M Stein, A O'Toole, M Haverkate, ... Nature medicine 26 (9), 1405-1411, 2020 | 240 | 2020 |
| Urgent need for a non-discriminatory and non-stigmatizing nomenclature for monkeypox virus C Happi, I Adetifa, P Mbala, R Njouom, E Nakoune, A Happi, N Ndodo, ... PLoS biology 20 (8), e3001769, 2022 | 239 | 2022 |
| Generation and transmission of interlineage recombinants in the SARS-CoV-2 pandemic B Jackson, MF Boni, MJ Bull, A Colleran, RM Colquhoun, AC Darby, ... Cell 184 (20), 5179-5188. e8, 2021 | 225 | 2021 |
| Tracking the international spread of SARS-CoV-2 lineages B. 1.1. 7 and B. 1.351/501Y-V2 with grinch Á O'Toole, V Hill, OG Pybus, A Watts, II Bogoch, K Khan, JP Messina, ... Wellcome Open Research 6, 2021 | 190 | 2021 |
| Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B. 1.1. 7 emergence MUG Kraemer, V Hill, C Ruis, S Dellicour, S Bajaj, JT McCrone, G Baele, ... Science 373 (6557), 889-895, 2021 | 157 | 2021 |
| Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research F Hufsky, K Lamkiewicz, A Almeida, A Aouacheria, C Arighi, A Bateman, ... Briefings in bioinformatics 22 (2), 642-663, 2021 | 151 | 2021 |
