Jérémie Bourdon
Jérémie Bourdon
Full Professor, Université de Nantes
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Cited by
Cited by
Parallel derivation of isogenic human primed and naive induced pluripotent stem cells
S Kilens, D Meistermann, D Moreno, C Chariau, A Gaignerie, A Reignier, ...
Nature communications 9 (1), 360, 2018
Integrated pseudotime analysis of human pre-implantation embryo single-cell transcriptomes reveals the dynamics of lineage specification
D Meistermann, A Bruneau, S Loubersac, A Reignier, J Firmin, ...
Cell Stem Cell 28 (9), 1625-1640. e6, 2021
Induction of human trophoblast stem cells from somatic cells and pluripotent stem cells
G Castel, D Meistermann, B Bretin, J Firmin, J Blin, S Loubersac, ...
Cell Reports 33 (8), 2020
Combinations of cytochrome P450 gene polymorphisms enhancing the risk for sporadic colorectal cancer related to red meat consumption
S Kury, B Buecher, S Robiou-du-Pont, C Scoul, V Sébille, H Colman, ...
Cancer Epidemiology Biomarkers & Prevention 16 (7), 1460-1467, 2007
Meneco, a topology-based gap-filling tool applicable to degraded genome-wide metabolic networks
S Prigent, C Frioux, SM Dittami, S Thiele, A Larhlimi, G Collet, F Gutknecht, ...
PLoS computational biology 13 (1), e1005276, 2017
A multi-objective constraint-based approach for modeling genome-scale microbial ecosystems
M Budinich, J Bourdon, A Larhlimi, D Eveillard
PloS one 12 (2), e0171744, 2017
Dynamical analysis of α-Euclidean algorithms
J Bourdon, B Daireaux, B Vallée
Journal of Algorithms 44 (1), 246-285, 2002
Size and path length of Patricia tries: dynamical sources context
J Bourdon
Random Structures & Algorithms 19 (3‐4), 289-315, 2001
Computational discovery of dynamic cell line specific Boolean networks from multiplex time-course data
M Razzaq, L Paulevé, A Siegel, J Saez-Rodriguez, J Bourdon, ...
PLoS computational biology 14 (10), e1006538, 2018
Generalized pattern matching statistics
J Bourdon, B Vallée
Mathematics and computer science II: algorithms, trees, combinatorics and …, 2002
Temporal constraints of a gene regulatory network: Refining a qualitative simulation
J Ahmad, J Bourdon, D Eveillard, J Fromentin, O Roux, C Sinoquet
Biosystems 98 (3), 149-159, 2009
Toward systems biology in brown algae to explore acclimation and adaptation to the shore environment
T Tonon, D Eveillard, S Prigent, J Bourdon, P Potin, C Boyen, A Siegel
Omics: a journal of integrative biology 15 (12), 883-892, 2011
Pattern matching statistics on correlated sources
J Bourdon, B Vallée
Latin American Symposium on Theoretical Informatics, 224-237, 2006
A combinatorial approach to products of Pisot substitutions
V Berthé, J Bourdon, T Jolivet, A Siegel
Ergodic Theory and Dynamical Systems 36 (6), 1757-1794, 2016
On the stack-size of general tries
J Bourdon, M Nebel, B Vallée
RAIRO-Theoretical Informatics and Applications 35 (2), 163-185, 2001
Computing diverse boolean networks from phosphoproteomic time series data
M Razzaq, R Kaminski, J Romero, T Schaub, J Bourdon, C Guziolowski
Computational Methods in Systems Biology: 16th International Conference …, 2018
Spatio-temporal analysis of human preimplantation development reveals dynamics of epiblast and trophectoderm
D Meistermann, S Loubersac, A Reignier, J Firmin, VF Campion, S Kilens, ...
bioRxiv, 604751, 2019
Exploring metabolism flexibility in complex organisms through quantitative study of precursor sets for system outputs
O Abdou-Arbi, S Lemosquet, JV Milgen, A Siegel, J Bourdon
BMC systems biology 8, 1-26, 2014
Integrating quantitative knowledge into a qualitative gene regulatory network
J Bourdon, D Eveillard, A Siegel
PLoS computational biology 7 (9), e1002157, 2011
Generating discrete planes with substitutions
V Berthé, J Bourdon, T Jolivet, A Siegel
Combinatorics on Words: 9th International Conference, WORDS 2013, Turku …, 2013
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