OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies R Jackson, N Matentzoglu, JA Overton, R Vita, JP Balhoff, PL Buttigieg, ... Database 2021, baab069, 2021 | 129 | 2021 |
Protein Ontology (PRO): enhancing and scaling up the representation of protein entities DA Natale, CN Arighi, JA Blake, J Bona, C Chen, SC Chen, KR Christie, ... Nucleic acids research 45 (D1), D339-D346, 2017 | 93 | 2017 |
The neurological disease ontology M Jensen, AP Cox, N Chaudhry, M Ng, D Sule, W Duncan, P Ray, ... Journal of biomedical semantics 4, 1-10, 2013 | 54 | 2013 |
A simple standard for sharing ontological mappings (SSSOM) N Matentzoglu, JP Balhoff, SM Bello, C Bizon, M Brush, TJ Callahan, ... Database 2022, 2022 | 50 | 2022 |
The national microbiome data collaborative: enabling microbiome science EM Wood-Charlson, Anubhav, D Auberry, H Blanco, MI Borkum, ... Nature Reviews Microbiology 18 (6), 313-314, 2020 | 50 | 2020 |
Microbiome metadata standards: Report of the national microbiome data collaborative’s workshop and follow-on activities P Vangay, J Burgin, A Johnston, KL Beck, DC Berrios, K Blumberg, ... Msystems 6 (1), 10.1128/msystems. 01194-20, 2021 | 39 | 2021 |
Zidovudine (AZT) versus AZT plus didanosine (ddI) versus AZT plus zalcitabine (ddC) in HIV infected adults J Darbyshire, M Foulkes, R Peto, W Duncan, A Babiker, R Collins, ... Cochrane database of systematic reviews 2010 (3), 1996 | 32 | 1996 |
Leveraging electronic dental record data for clinical research in the national dental PBRN practices TP Thyvalikakath, WD Duncan, Z Siddiqui, M LaPradd, G Eckert, ... Applied Clinical Informatics 11 (02), 305-314, 2020 | 31 | 2020 |
Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies N Matentzoglu, D Goutte-Gattat, SZK Tan, JP Balhoff, S Carbon, ... Database 2022, baac087, 2022 | 30 | 2022 |
The National Microbiome Data Collaborative Data Portal: an integrated multi-omics microbiome data resource EA Eloe-Fadrosh, F Ahmed, M Babinski, J Baumes, M Borkum, L Bramer, ... Nucleic Acids Research 50 (D1), D828-D836, 2022 | 26 | 2022 |
Ontological distinctions between hardware and software WD Duncan Applied Ontology 12 (1), 5-32, 2017 | 25 | 2017 |
Immediate versus deferred zidovudine (AZT) in asymptomatic or mildly symptomatic HIV infected adults J Darbyshire, M Foulkes, R Peto, W Duncan, A Babiker, R Collins, ... Cochrane database of systematic reviews 2010 (3), 1996 | 22 | 1996 |
The Linked Data Modeling Language (LinkML): A General-Purpose Data Modeling Framework Grounded in Machine-Readable Semantics. SAT Moxon, H Solbrig, DR Unni, D Jiao, RM Bruskiewich, JP Balhoff, ... ICBO, 148-151, 2021 | 19 | 2021 |
Representing vision and blindness PL Ray, AP Cox, M Jensen, T Allen, W Duncan, AD Diehl Journal of biomedical semantics 7, 1-12, 2016 | 18 | 2016 |
An ontology-based method for secondary use of electronic dental record data TKL Schleyer, A Ruttenberg, W Duncan, M Haendel, C Torniai, A Acharya, ... AMIA Summits on Translational Science Proceedings 2013, 234, 2013 | 17 | 2013 |
Root canal treatment survival analysis in national dental PBRN practices T Thyvalikakath, M LaPradd, Z Siddiqui, WD Duncan, G Eckert, JK Medam, ... Journal of dental research 101 (11), 1328-1334, 2022 | 15 | 2022 |
An ontology for representing hematologic malignancies: the cancer cell ontology LM Serra, WD Duncan, AD Diehl BMC bioinformatics 20, 231-236, 2019 | 15 | 2019 |
First steps towards an ontology of belief A Barton, W Duncan, F Toyoshima, JF Ethier Joint Ontology Workshops-JOWO 2018, co-located with the 10th International …, 2018 | 12 | 2018 |
A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology Y He, H Yu, A Huffman, AY Lin, DA Natale, J Beverley, L Zheng, Y Perl, ... Journal of biomedical semantics 13 (1), 25, 2022 | 11 | 2022 |
Microbiome metadata standards: report of the National Microbiome Data Collaborative’s Workshop and follow-on activities. mSystems 6: e01194-20 P Vangay, J Burgin, A Johnston, KL Beck, DC Berrios, K Blumberg, ... PubMed PubMed Central, 2021 | 11 | 2021 |