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Fritz J Sedlazeck
Fritz J Sedlazeck
Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston TX 77030
Verified email at bcm.edu - Homepage
Title
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Cited by
Year
Phased diploid genome assembly with single-molecule real-time sequencing
CS Chin, P Peluso, FJ Sedlazeck, M Nattestad, GT Concepcion, A Clum, ...
Nature methods 13 (12), 1050-1054, 2016
13182016
Accurate detection of complex structural variations using single-molecule sequencing
FJ Sedlazeck, P Rescheneder, M Smolka, H Fang, M Nattestad, ...
Nature methods 15 (6), 461-468, 2018
8302018
GenomeScope: fast reference-free genome profiling from short reads
GW Vurture, FJ Sedlazeck, M Nattestad, CJ Underwood, H Fang, ...
Bioinformatics 33 (14), 2202-2204, 2017
7872017
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome
AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ...
Nature biotechnology 37 (10), 1155-1162, 2019
7012019
The pineapple genome and the evolution of CAM photosynthesis
R Ming, R VanBuren, CM Wai, H Tang, MC Schatz, JE Bowers, E Lyons, ...
Nature genetics 47 (12), 1435-1442, 2015
4382015
The complete sequence of a human genome
S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ...
Science 376 (6588), 44-53, 2022
3752022
Updating benchtop sequencing performance comparison
S Jünemann, FJ Sedlazeck, K Prior, A Albersmeier, U John, J Kalinowski, ...
Nature biotechnology 31 (4), 294-296, 2013
3642013
Piercing the dark matter: bioinformatics of long-range sequencing and mapping
FJ Sedlazeck, H Lee, CA Darby, MC Schatz
Nature Reviews Genetics 19 (6), 329-346, 2018
3342018
NextGenMap: fast and accurate read mapping in highly polymorphic genomes
FJ Sedlazeck, P Rescheneder, A Von Haeseler
Bioinformatics 29 (21), 2790-2791, 2013
3272013
RaGOO: fast and accurate reference-guided scaffolding of draft genomes
M Alonge, S Soyk, S Ramakrishnan, X Wang, S Goodwin, FJ Sedlazeck, ...
Genome biology 20 (1), 1-17, 2019
3212019
Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast
DC Jeffares, C Jolly, M Hoti, D Speed, L Shaw, C Rallis, F Balloux, ...
Nature communications 8 (1), 1-11, 2017
3042017
Major impacts of widespread structural variation on gene expression and crop improvement in tomato
M Alonge, X Wang, M Benoit, S Soyk, L Pereira, L Zhang, H Suresh, ...
Cell 182 (1), 145-161. e23, 2020
2762020
Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes
K Shafin, T Pesout, R Lorig-Roach, M Haukness, HE Olsen, C Bosworth, ...
Nature biotechnology 38 (9), 1044-1053, 2020
247*2020
Structural variant calling: the long and the short of it
M Mahmoud, N Gobet, DI Cruz-Dávalos, N Mounier, C Dessimoz, ...
Genome biology 20 (1), 1-14, 2019
2392019
Targeted nanopore sequencing with Cas9-guided adapter ligation
T Gilpatrick, I Lee, JE Graham, E Raimondeau, R Bowen, A Heron, ...
Nature biotechnology 38 (4), 433-438, 2020
202*2020
A robust benchmark for detection of germline large deletions and insertions
JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ...
Nature biotechnology 38 (11), 1347-1355, 2020
195*2020
Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions
D Butler, C Mozsary, C Meydan, J Foox, J Rosiene, A Shaiber, D Danko, ...
Nature communications 12 (1), 1-17, 2021
171*2021
Chromosomal-level assembly of the Asian seabass genome using long sequence reads and multi-layered scaffolding
S Vij, H Kuhl, IS Kuznetsova, A Komissarov, AA Yurchenko, ...
PLoS genetics 12 (4), e1005954, 2016
1352016
A multi-task convolutional deep neural network for variant calling in single molecule sequencing
R Luo, FJ Sedlazeck, TW Lam, MC Schatz
Nature communications 10 (1), 1-11, 2019
116*2019
Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line
M Nattestad, S Goodwin, K Ng, T Baslan, FJ Sedlazeck, P Rescheneder, ...
Genome research 28 (8), 1126-1135, 2018
1082018
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