| Phased diploid genome assembly with single-molecule real-time sequencing CS Chin, P Peluso, FJ Sedlazeck, M Nattestad, GT Concepcion, A Clum, ... Nature methods 13 (12), 1050-1054, 2016 | 834 | 2016 |
| Accurate detection of complex structural variations using single-molecule sequencing FJ Sedlazeck, P Rescheneder, M Smolka, H Fang, M Nattestad, ... Nature methods 15 (6), 461-468, 2018 | 446 | 2018 |
| GenomeScope: fast reference-free genome profiling from short reads GW Vurture, FJ Sedlazeck, M Nattestad, CJ Underwood, H Fang, ... Bioinformatics 33 (14), 2202-2204, 2017 | 416 | 2017 |
| The pineapple genome and the evolution of CAM photosynthesis R Ming, R VanBuren, CM Wai, H Tang, MC Schatz, JE Bowers, E Lyons, ... Nature genetics 47 (12), 1435-1442, 2015 | 306 | 2015 |
| Updating benchtop sequencing performance comparison S Jünemann, FJ Sedlazeck, K Prior, A Albersmeier, U John, J Kalinowski, ... Nature biotechnology 31 (4), 294-296, 2013 | 283 | 2013 |
| NextGenMap: fast and accurate read mapping in highly polymorphic genomes FJ Sedlazeck, P Rescheneder, A Von Haeseler Bioinformatics 29 (21), 2790-2791, 2013 | 245 | 2013 |
| Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ... Nature biotechnology 37 (10), 1155-1162, 2019 | 242* | 2019 |
| Piercing the dark matter: bioinformatics of long-range sequencing and mapping FJ Sedlazeck, H Lee, CA Darby, MC Schatz Nature Reviews Genetics 19 (6), 329-346, 2018 | 217 | 2018 |
| Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast DC Jeffares, C Jolly, M Hoti, D Speed, L Shaw, C Rallis, F Balloux, ... Nature communications 8 (1), 1-11, 2017 | 140 | 2017 |
| Chromosomal-level assembly of the Asian seabass genome using long sequence reads and multi-layered scaffolding S Vij, H Kuhl, IS Kuznetsova, A Komissarov, AA Yurchenko, ... PLoS genetics 12 (4), e1005954, 2016 | 104 | 2016 |
| RaGOO: fast and accurate reference-guided scaffolding of draft genomes M Alonge, S Soyk, S Ramakrishnan, X Wang, S Goodwin, FJ Sedlazeck, ... Genome biology 20 (1), 1-17, 2019 | 82* | 2019 |
| Adenosine deaminases that act on RNA induce reproducible changes in abundance and sequence of embryonic miRNAs C Vesely, S Tauber, FJ Sedlazeck, A von Haeseler, MF Jantsch Genome research 22 (8), 1468-1476, 2012 | 76 | 2012 |
| Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes K Shafin, T Pesout, R Lorig-Roach, M Haukness, HE Olsen, C Bosworth, ... Nature biotechnology 38 (9), 1044-1053, 2020 | 73* | 2020 |
| A robust benchmark for detection of germline large deletions and insertions JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ... Nature biotechnology, 1-9, 2020 | 69* | 2020 |
| Targeted nanopore sequencing with Cas9-guided adapter ligation T Gilpatrick, I Lee, JE Graham, E Raimondeau, R Bowen, A Heron, ... Nature biotechnology 38 (4), 433-438, 2020 | 66 | 2020 |
| Structural variant calling: the long and the short of it M Mahmoud, N Gobet, DI Cruz-Dávalos, N Mounier, C Dessimoz, ... Genome biology 20 (1), 1-14, 2019 | 66 | 2019 |
| Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line M Nattestad, S Goodwin, K Ng, T Baslan, FJ Sedlazeck, P Rescheneder, ... Genome research 28 (8), 1126-1135, 2018 | 59 | 2018 |
| A multi-task convolutional deep neural network for variant calling in single molecule sequencing R Luo, FJ Sedlazeck, TW Lam, MC Schatz Nature communications 10 (1), 1-11, 2019 | 55* | 2019 |
| The genomic basis of circadian and circalunar timing adaptations in a midge TS Kaiser, B Poehn, D Szkiba, M Preussner, FJ Sedlazeck, A Zrim, ... Nature 540 (7631), 69-73, 2016 | 53 | 2016 |
| Host, viral, and environmental transcriptome profiles of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) DJ Butler, C Mozsary, C Meydan, DC Danko, J Foox, J Rosiene, ... bioRxiv, 2020 | 51* | 2020 |
Michael C. SchatzBloomberg Distinguished Associate Professor, Johns Hopkins UniversityVerified email at cs.jhu.edu
