Asker Brejnrod
Asker Brejnrod
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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
Maturation of the gut microbiome and risk of asthma in childhood
J Stokholm, MJ Blaser, J Thorsen, MA Rasmussen, J Waage, RK Vinding, ...
Nature communications 9 (1), 141, 2018
Treatment of active Crohn’s disease with an ordinary food-based diet that replicates exclusive enteral nutrition
V Svolos, R Hansen, B Nichols, C Quince, UZ Ijaz, RT Papadopoulou, ...
Gastroenterology 156 (5), 1354-1367. e6, 2019
QIIME 2: reproducible, interactive, scalable, and extensible microbiome data science. PeerJ
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
Inc 6, e27295v2, 2018
Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies
J Thorsen, A Brejnrod, M Mortensen, MA Rasmussen, J Stokholm, ...
Microbiome 4, 1-14, 2016
Co-selection of antibiotic resistance genes, and mobile genetic elements in the presence of heavy metals in poultry farm environments
SH Mazhar, X Li, A Rashid, JM Su, J Xu, AD Brejnrod, JQ Su, Y Wu, ...
Science of The Total Environment 755, 142702, 2021
Heavy metal exposure causes changes in the metabolic health-associated gut microbiome and metabolites
X Li, AD Brejnrod, M Ernst, M Rykær, J Herschend, NMC Olsen, ...
Environment International 126, 454-467, 2019
Coping with copper: legacy effect of copper on potential activity of soil bacteria following a century of exposure
I Nunes, S Jacquiod, A Brejnrod, PE Holm, A Johansen, KK Brandt, ...
FEMS microbiology ecology 92 (11), fiw175, 2016
Interspecies interactions result in enhanced biofilm formation by co-cultures of bacteria isolated from a food processing environment
HL Røder, PK Raghupathi, J Herschend, A Brejnrod, S Knøchel, ...
Food Microbiology 51, 18-24, 2015
Delivery mode and gut microbial changes correlate with an increased risk of childhood asthma
J Stokholm, J Thorsen, MJ Blaser, MA Rasmussen, M Hjelmsø, S Shah, ...
Science translational medicine 12 (569), eaax9929, 2020
Infant airway microbiota and topical immune perturbations in the origins of childhood asthma
J Thorsen, MA Rasmussen, J Waage, M Mortensen, A Brejnrod, ...
Nature communications 10 (1), 5001, 2019
Eosinophilic airway inflammation in asthmatic patients is associated with an altered airway microbiome
A Sverrild, P Kiilerich, A Brejnrod, R Pedersen, C Porsbjerg, A Bergqvist, ...
Journal of Allergy and Clinical Immunology 140 (2), 407-417. e11, 2017
Exploring the immediate and long-term impact on bacterial communities in soil amended with animal and urban organic waste fertilizers using pyrosequencing and screening for …
L Riber, PHB Poulsen, WA Al-Soud, LB Skov Hansen, L Bergmark, ...
FEMS microbiology ecology 90 (1), 206-224, 2014
A community resource for paired genomic and metabolomic data mining
MA Schorn, S Verhoeven, L Ridder, F Huber, DD Acharya, AA Aksenov, ...
Nature Chemical Biology 17 (4), 363-368, 2021
Legacy effects on the recovery of soil bacterial communities from extreme temperature perturbation
SD Jurburg, I Nunes, A Brejnrod, S Jacquiod, A Priemé, SJ Sørensen, ...
Frontiers in Microbiology 8, 1832, 2017
Chemically informed analyses of metabolomics mass spectrometry data with Qemistree
A Tripathi, Y Vázquez-Baeza, JM Gauglitz, M Wang, K Dührkop, ...
Nature chemical biology 17 (2), 146-151, 2021
The human milk microbiota is modulated by maternal diet
M Padilha, NB Danneskiold-Samsøe, A Brejnrod, C Hoffmann, VP Cabral, ...
Microorganisms 7 (11), 502, 2019
Local diversity of heathland Cercozoa explored by in-depth sequencing
CB Harder, R Rønn, A Brejnrod, D Bass, WA Al-Soud, F Ekelund
The ISME journal 10 (10), 2488-2497, 2016
The infant gut resistome associates with E. coli, environmental exposures, gut microbiome maturity, and asthma-associated bacterial composition
X Li, J Stokholm, A Brejnrod, GA Vestergaard, J Russel, U Trivedi, ...
Cell host & microbe 29 (6), 975-987. e4, 2021
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