| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 9281 | 2019 |
| QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018 | 858 | 2018 |
| Maturation of the gut microbiome and risk of asthma in childhood J Stokholm, MJ Blaser, J Thorsen, MA Rasmussen, J Waage, RK Vinding, ... Nature communications 9 (1), 141, 2018 | 412 | 2018 |
| Treatment of active Crohn’s disease with an ordinary food-based diet that replicates exclusive enteral nutrition V Svolos, R Hansen, B Nichols, C Quince, UZ Ijaz, RT Papadopoulou, ... Gastroenterology 156 (5), 1354-1367. e6, 2019 | 244 | 2019 |
| Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies J Thorsen, A Brejnrod, M Mortensen, MA Rasmussen, J Stokholm, ... Microbiome 4, 1-14, 2016 | 141 | 2016 |
| Coping with copper: legacy effect of copper on potential activity of soil bacteria following a century of exposure I Nunes, S Jacquiod, A Brejnrod, PE Holm, A Johansen, KK Brandt, ... FEMS microbiology ecology 92 (11), 2016 | 124 | 2016 |
| Heavy metal exposure causes changes in the metabolic health-associated gut microbiome and metabolites X Li, AD Brejnrod, M Ernst, M Rykær, J Herschend, NMC Olsen, ... Environment international 126, 454-467, 2019 | 114 | 2019 |
| Interspecies interactions result in enhanced biofilm formation by co-cultures of bacteria isolated from a food processing environment HL Røder, PK Raghupathi, J Herschend, A Brejnrod, S Knøchel, ... Food Microbiology 51, 18-24, 2015 | 104 | 2015 |
| Eosinophilic airway inflammation in asthmatic patients is associated with an altered airway microbiome A Sverrild, P Kiilerich, A Brejnrod, R Pedersen, C Porsbjerg, A Bergqvist, ... Journal of Allergy and Clinical Immunology 140 (2), 407-417. e11, 2017 | 94 | 2017 |
| Co-selection of antibiotic resistance genes, and mobile genetic elements in the presence of heavy metals in poultry farm environments SH Mazhar, X Li, A Rashid, JM Su, J Xu, AD Brejnrod, JQ Su, Y Wu, ... Science of The Total Environment 755, 142702, 2021 | 92 | 2021 |
| Exploring the immediate and long-term impact on bacterial communities in soil amended with animal and urban organic waste fertilizers using pyrosequencing and screening for … L Riber, PHB Poulsen, WA Al-Soud, LB Skov Hansen, L Bergmark, ... FEMS Microbiology Ecology 90 (1), 206-224, 2014 | 88 | 2014 |
| Delivery mode and gut microbial changes correlate with an increased risk of childhood asthma J Stokholm, J Thorsen, MJ Blaser, MA Rasmussen, M Hjelmsø, S Shah, ... Science translational medicine 12 (569), eaax9929, 2020 | 81 | 2020 |
| Infant airway microbiota and topical immune perturbations in the origins of childhood asthma J Thorsen, MA Rasmussen, J Waage, M Mortensen, A Brejnrod, ... Nature communications 10 (1), 5001, 2019 | 81 | 2019 |
| Legacy effects on the recovery of soil bacterial communities from extreme temperature perturbation SD Jurburg, I Nunes, A Brejnrod, S Jacquiod, A Priemé, SJ Sørensen, ... Frontiers in Microbiology 8, 1832, 2017 | 79 | 2017 |
| A community resource for paired genomic and metabolomic data mining MA Schorn, S Verhoeven, L Ridder, F Huber, DD Acharya, AA Aksenov, ... Nature Chemical Biology 17 (4), 363-368, 2021 | 75 | 2021 |
| Local diversity of heathland Cercozoa explored by in-depth sequencing CB Harder, R Rønn, A Brejnrod, D Bass, WA Al-Soud, F Ekelund The ISME journal 10 (10), 2488-2497, 2016 | 71 | 2016 |
| Chemically informed analyses of metabolomics mass spectrometry data with Qemistree A Tripathi, Y Vázquez-Baeza, JM Gauglitz, M Wang, K Dührkop, ... Nature chemical biology 17 (2), 146-151, 2021 | 68 | 2021 |
| The human milk microbiota is modulated by maternal diet M Padilha, NB Danneskiold-Samsøe, A Brejnrod, C Hoffmann, VP Cabral, ... Microorganisms 7 (11), 502, 2019 | 65 | 2019 |
| Deciphering conjugative plasmid permissiveness in wastewater microbiomes S Jacquiod, A Brejnrod, SM Morberg, W Abu Al‐Soud, SJ Sørensen, ... Molecular ecology 26 (13), 3556-3571, 2017 | 65 | 2017 |
| Short-and long-term impacts of azithromycin treatment on the gut microbiota in children: a double-blind, randomized, placebo-controlled trial S Wei, MS Mortensen, J Stokholm, AD Brejnrod, J Thorsen, ... EBioMedicine 38, 265-272, 2018 | 60 | 2018 |
Søren J. SørensenUniversity of CopenhagenVerified email at bio.ku.dk
