Patrick Munk
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Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
RS Hendriksen, P Munk, P Njage, B Van Bunnik, L McNally, ...
Nature communications 10 (1), 1-12, 2019
2212019
Clades of huge phages from across Earth’s ecosystems
B Al-Shayeb, R Sachdeva, LX Chen, F Ward, P Munk, A Devoto, ...
Nature 578 (7795), 425-431, 2020
1252020
Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries
P Munk, BE Knudsen, O Lukjacenko, ASR Duarte, L Van Gompel, ...
Nature microbiology 3 (8), 898-908, 2018
1102018
Impact of sample type and DNA isolation procedure on genomic inference of microbiome composition
BE Knudsen, L Bergmark, P Munk, O Lukjancenko, A Priemé, ...
MSystems 1 (5), e00095-16, 2016
742016
Megaphages infect Prevotella and variants are widespread in gut microbiomes
AE Devoto, JM Santini, MR Olm, K Anantharaman, P Munk, J Tung, ...
Nature microbiology 4 (4), 693-700, 2019
722019
A sampling and metagenomic sequencing-based methodology for monitoring antimicrobial resistance in swine herds
P Munk, VD Andersen, L de Knegt, MS Jensen, BE Knudsen, ...
Journal of Antimicrobial Chemotherapy 72 (2), 385-392, 2016
572016
The antimicrobial resistome in relation to antimicrobial use and biosecurity in pig farming, a metagenome-wide association study in nine European countries
L Van Gompel, REC Luiken, S Sarrazin, P Munk, BE Knudsen, ...
Journal of Antimicrobial Chemotherapy, 2019
242019
Impact of Sample Type and DNA Isolation Procedure on Genomic Inference of Microbiome Composition. mSystems 1: e00095–16
BE Knudsen, L Bergmark, P Munk, O Lukjancenko, A Prieme, ...
222016
Associations between antimicrobial use and the faecal resistome on broiler farms from nine European countries
REC Luiken, L Van Gompel, P Munk, S Sarrazin, P Joosten, ...
Journal of Antimicrobial Chemotherapy, 2019
152019
The association between measurements of antimicrobial use and resistance in the faeces microbiota of finisher batches
VD Andersen, LV De Knegt, P Munk, MS Jensen, Y Agersø, FM Aarestrup, ...
Epidemiology & Infection 145 (13), 2827-2837, 2017
132017
Farm dust resistomes and bacterial microbiomes in European poultry and pig farms
REC Luiken, L Van Gompel, A Bossers, P Munk, P Joosten, RB Hansen, ...
Environment International 143, 105971, 2020
122020
Global Sewage Surveillance project consortium
RS Hendriksen, P Munk, P Njage, B van Bunnik, L McNally, ...
Amid C, Cochrane G, Sicheritz-Ponten T, Schmitt H, Alvarez JRM, Aidara-Kane …, 2019
122019
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage. Nat Commun. 2019; 10 (1): 1124
RS Hendriksen, P Munk, P Njage, B Van Bunnik, L McNally, ...
11
Pathogen surveillance in the informal settlement, Kibera, Kenya, using a metagenomics approach
RS Hendriksen, O Lukjancenko, P Munk, MH Hjelmsø, JR Verani, ...
PloS one 14 (10), e0222531, 2019
102019
Setting a baseline for global urban virome surveillance in sewage
DF Nieuwenhuijse, BBO Munnink, MVT Phan, P Munk, ...
Scientific reports 10 (1), 1-13, 2020
92020
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage. Nat. Commun. 10, 1124
RS Hendriksen, P Munk, P Njage, B van Bunnik, L McNally, ...
92019
Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries. Nat Microbiol 3: 898–908
P Munk, BE Knudsen, O Lukjancenko, ASR Duarte, L Van Gompel, ...
92018
Predicting effects of changed antimicrobial usage on the abundance of antimicrobial resistance genes in finisher’gut microbiomes
VD Andersen, FM Aarestrup, P Munk, MS Jensen, LV de Knegt, ...
Preventive Veterinary Medicine 174, 104853, 2020
72020
Lund O, Hald T, Pamp SJ, Vigre H, Heederik D, Wagenaar JA, Mevius D, Aarestrup FM. 2018
P Munk, BE Knudsen, O Lukjancenko, ASR Duarte, L Van Gompel, ...
Abundance and diversity of the faecal resistome in slaughter pigs and …, 2018
72018
Addressing Learning Needs on the Use of Metagenomics in Antimicrobial Resistance Surveillance
ASR Duarte, KDC Stärk, P Munk, P Leekitcharoenphon, A Bossers, ...
Frontiers in Public Health 8, 38, 2020
62020
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Artikler 1–20