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Patrick Munk
Patrick Munk
Assistant Professor, Technical University of Denmark
Bekræftet mail på food.dtu.dk - Startside
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Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
RS Hendriksen, P Munk, P Njage, B Van Bunnik, L McNally, ...
Nature communications 10 (1), 1-12, 2019
424*2019
Clades of huge phages from across Earth’s ecosystems
B Al-Shayeb, R Sachdeva, LX Chen, F Ward, P Munk, A Devoto, ...
Nature 578 (7795), 425-431, 2020
2382020
Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries
P Munk, BE Knudsen, O Lukjacenko, ASR Duarte, L Van Gompel, ...
Nature microbiology 3 (8), 898-908, 2018
1902018
Megaphages infect Prevotella and variants are widespread in gut microbiomes
AE Devoto, JM Santini, MR Olm, K Anantharaman, P Munk, J Tung, ...
Nature microbiology 4 (4), 693-700, 2019
1152019
Impact of sample type and DNA isolation procedure on genomic inference of microbiome composition
BE Knudsen, L Bergmark, P Munk, O Lukjancenko, A Priemé, ...
MSystems 1 (5), e00095-16, 2016
1152016
A sampling and metagenomic sequencing-based methodology for monitoring antimicrobial resistance in swine herds
P Munk, VD Andersen, L de Knegt, MS Jensen, BE Knudsen, ...
Journal of Antimicrobial Chemotherapy 72 (2), 385-392, 2016
732016
The antimicrobial resistome in relation to antimicrobial use and biosecurity in pig farming, a metagenome-wide association study in nine European countries
L Van Gompel, REC Luiken, S Sarrazin, P Munk, BE Knudsen, ...
Journal of Antimicrobial Chemotherapy, 2019
392019
Farm dust resistomes and bacterial microbiomes in European poultry and pig farms
REC Luiken, L Van Gompel, A Bossers, P Munk, P Joosten, RB Hansen, ...
Environment international 143, 105971, 2020
342020
Associations between antimicrobial use and the faecal resistome on broiler farms from nine European countries
REC Luiken, L Van Gompel, P Munk, S Sarrazin, P Joosten, ...
Journal of Antimicrobial Chemotherapy, 2019
342019
Setting a baseline for global urban virome surveillance in sewage
DF Nieuwenhuijse, BB Oude Munnink, MVT Phan, P Munk, ...
Scientific Reports 10 (1), 1-13, 2020
272020
Pathogen surveillance in the informal settlement, Kibera, Kenya, using a metagenomics approach
RS Hendriksen, O Lukjancenko, P Munk, MH Hjelmsø, JR Verani, ...
PLoS One 14 (10), e0222531, 2019
212019
Description and determinants of the faecal resistome and microbiome of farmers and slaughterhouse workers: a metagenome-wide cross-sectional study
L Van Gompel, REC Luiken, RB Hansen, P Munk, M Bouwknegt, L Heres, ...
Environment international 143, 105939, 2020
192020
The gut microbiome but not the resistome is associated with urogenital schistosomiasis in preschool-aged children
DNM Osakunor, P Munk, T Mduluza, TN Petersen, C Brinch, A Ivens, ...
Communications biology 3 (1), 1-11, 2020
162020
Patterns of gene content and co-occurrence constrain the evolutionary path toward animal association in Candidate Phyla Radiation Bacteria
AL Jaffe, AD Thomas, C He, R Keren, LE Valentin-Alvarado, P Munk, ...
MBio 12 (4), e00521-21, 2021
152021
The association between measurements of antimicrobial use and resistance in the faeces microbiota of finisher batches
VD Andersen, LV De Knegt, P Munk, MS Jensen, Y Agersø, FM Aarestrup, ...
Epidemiology & Infection 145 (13), 2827-2837, 2017
142017
Predicting effects of changed antimicrobial usage on the abundance of antimicrobial resistance genes in finisher’gut microbiomes
VD Andersen, FM Aarestrup, P Munk, MS Jensen, LV de Knegt, ...
Preventive veterinary medicine 174, 104853, 2020
112020
Genomic evolution of antimicrobial resistance in Escherichia coli
P Leekitcharoenphon, MHK Johansson, P Munk, B Malorny, ...
Scientific Reports 11 (1), 1-12, 2021
92021
Extended-spectrum beta-lactamase-producing Escherichia coli and antimicrobial resistance in municipal and hospital wastewaters in Czech Republic: Culture-based and metagenomic …
I Kutilova, M Medvecky, P Leekitcharoenphon, P Munk, M Masarikova, ...
Environmental Research 193, 110487, 2021
92021
Addressing learning needs on the use of metagenomics in antimicrobial resistance surveillance
ASR Duarte, KDC Stärk, P Munk, P Leekitcharoenphon, A Bossers, ...
Frontiers in Public Health 8, 38, 2020
92020
Antimicrobial resistance in hospital wastewater in Scotland: a cross-sectional metagenomics study
M Perry, B van Bunnik, L McNally, B Wee, P Munk, A Warr, B Moore, ...
The Lancet 394, S1, 2019
92019
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Artikler 1–20