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Patrick Munk
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Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
RS Hendriksen, P Munk, P Njage, B Van Bunnik, L McNally, ...
Nature communications 10 (1), 1124, 2019
706*2019
Clades of huge phages from across Earth’s ecosystems
B Al-Shayeb, R Sachdeva, LX Chen, F Ward, P Munk, A Devoto, ...
Nature 578 (7795), 425-431, 2020
3802020
Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries
P Munk, BE Knudsen, O Lukjacenko, ASR Duarte, L Van Gompel, ...
Nature microbiology 3 (8), 898-908, 2018
2672018
Impact of sample type and DNA isolation procedure on genomic inference of microbiome composition
BE Knudsen, L Bergmark, P Munk, O Lukjancenko, A Priemé, ...
MSystems 1 (5), 10.1128/msystems. 00095-16, 2016
1592016
Megaphages infect Prevotella and variants are widespread in gut microbiomes
AE Devoto, JM Santini, MR Olm, K Anantharaman, P Munk, J Tung, ...
Nature microbiology 4 (4), 693-700, 2019
1552019
A sampling and metagenomic sequencing-based methodology for monitoring antimicrobial resistance in swine herds
P Munk, VD Andersen, L de Knegt, MS Jensen, BE Knudsen, ...
Journal of Antimicrobial Chemotherapy 72 (2), 385-392, 2016
962016
Farm dust resistomes and bacterial microbiomes in European poultry and pig farms
REC Luiken, L Van Gompel, A Bossers, P Munk, P Joosten, RB Hansen, ...
Environment International 143, 105971, 2020
812020
Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance
P Munk, C Brinch, FD Møller, TN Petersen, RS Hendriksen, AM Seyfarth, ...
Nature Communications 13 (1), 7251, 2022
702022
The antimicrobial resistome in relation to antimicrobial use and biosecurity in pig farming, a metagenome-wide association study in nine European countries
L Van Gompel, REC Luiken, S Sarrazin, P Munk, BE Knudsen, ...
Journal of Antimicrobial Chemotherapy, 2019
642019
Associations between antimicrobial use and the faecal resistome on broiler farms from nine European countries
REC Luiken, L Van Gompel, P Munk, S Sarrazin, P Joosten, ...
Journal of Antimicrobial Chemotherapy, 2019
562019
Setting a baseline for global urban virome surveillance in sewage
DF Nieuwenhuijse, BB Oude Munnink, MVT Phan, P Munk, ...
Scientific Reports 10 (1), 13748, 2020
422020
Genomic evolution of antimicrobial resistance in Escherichia coli
P Leekitcharoenphon, MHK Johansson, P Munk, B Malorny, ...
Scientific reports 11 (1), 15108, 2021
412021
Description and determinants of the faecal resistome and microbiome of farmers and slaughterhouse workers: a metagenome-wide cross-sectional study
L Van Gompel, REC Luiken, RB Hansen, P Munk, M Bouwknegt, L Heres, ...
Environment international 143, 105939, 2020
392020
Secrets of the hospital underbelly: patterns of abundance of antimicrobial resistance genes in hospital wastewater vary by specific antimicrobial and bacterial family
MR Perry, HC Lepper, L McNally, BA Wee, P Munk, A Warr, ...
Frontiers in Microbiology 12, 703560, 2021
302021
The gut microbiome but not the resistome is associated with urogenital schistosomiasis in preschool-aged children
DNM Osakunor, P Munk, T Mduluza, TN Petersen, C Brinch, A Ivens, ...
Communications Biology 3 (1), 155, 2020
302020
Extended-spectrum beta-lactamase-producing Escherichia coli and antimicrobial resistance in municipal and hospital wastewaters in Czech Republic: Culture-based and metagenomic …
I Kutilova, M Medvecky, P Leekitcharoenphon, P Munk, M Masarikova, ...
Environmental Research 193, 110487, 2021
282021
Pathogen surveillance in the informal settlement, Kibera, Kenya, using a metagenomics approach
RS Hendriksen, O Lukjancenko, P Munk, MH Hjelmsø, JR Verani, ...
PLoS One 14 (10), e0222531, 2019
282019
Patterns of gene content and co-occurrence constrain the evolutionary path toward animal association in candidate phyla radiation bacteria
AL Jaffe, AD Thomas, C He, R Keren, LE Valentin-Alvarado, P Munk, ...
MBio 12 (4), 10.1128/mbio. 00521-21, 2021
252021
Global Distribution of mcr Gene Variants in 214K Metagenomic Samples
HM Martiny, P Munk, C Brinch, J Szarvas, FM Aarestrup, TN Petersen
Msystems 7 (2), e00105-22, 2022
202022
Predicting effects of changed antimicrobial usage on the abundance of antimicrobial resistance genes in finisher’gut microbiomes
VD Andersen, FM Aarestrup, P Munk, MS Jensen, LV de Knegt, ...
Preventive veterinary medicine 174, 104853, 2020
202020
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