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Ruth E. Timme
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Implementation of nationwide real-time whole-genome sequencing to enhance listeriosis outbreak detection and investigation
BR Jackson, C Tarr, E Strain, KA Jackson, A Conrad, H Carleton, LS Katz, ...
Clinical Infectious Diseases 63 (3), 380-386, 2016
3482016
Practical value of food pathogen traceability through building a whole-genome sequencing network and database
MW Allard, E Strain, D Melka, K Bunning, SM Musser, EW Brown, ...
Journal of clinical microbiology 54 (8), 1975-1983, 2016
3362016
A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeats
RE Timme, JV Kuehl, JL Boore, RK Jansen
American Journal of Botany 94 (3), 302-312, 2007
3292007
Origin of strigolactones in the green lineage
PM Delaux, X Xie, RE Timme, V Puech‐Pages, C Dunand, E Lecompte, ...
New Phytologist 195 (4), 857-871, 2012
3132012
Broad phylogenomic sampling and the sister lineage of land plants
RE Timme, TR Bachvaroff, CF Delwiche
PLoS one 7 (1), e29696, 2012
2922012
Multigene phylogeny of the green lineage reveals the origin and diversification of land plants
C Finet, RE Timme, CF Delwiche, F Marlétaz
Current Biology 20 (24), 2217-2222, 2010
2452010
Phylogenetic networks: modeling, reconstructibility, and accuracy
BME Moret, L Nakhleh, T Warnow, CR Linder, A Tholse, A Padolina, ...
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB) 1 …, 2004
2302004
Unraveling the evolution of auxin signaling
I De Smet, U Voß, S Lau, M Wilson, N Shao, RE Timme, R Swarup, I Kerr, ...
Plant physiology 155 (1), 209-221, 2011
1982011
On the evolutionary history, population genetics and diversity among isolates of Salmonella Enteritidis PFGE pattern JEGX01. 0004
MW Allard, Y Luo, E Strain, J Pettengill, R Timme, C Wang, C Li, CE Keys, ...
PloS one 8 (1), e55254, 2013
1682013
Genomics of foodborne pathogens for microbial food safety
MW Allard, R Bell, CM Ferreira, N Gonzalez-Escalona, M Hoffmann, ...
Current Opinion in Biotechnology 49, 224-229, 2018
1672018
Phylogenetic Diversity of the Enteric Pathogen Salmonella enterica subsp. enterica Inferred from Genome-Wide Reference-Free SNP Characters
RE Timme, JB Pettengill, MW Allard, E Strain, R Barrangou, C Wehnes, ...
Genome biology and evolution 5 (11), 2109-2123, 2013
1462013
High-resolution phylogeny for Helianthus (Asteraceae) using the 18S-26S ribosomal DNA external transcribed spacer
RE Timme, BB Simpson, CR Linder
American journal of botany 94 (11), 1837-1852, 2007
1252007
Characterization and evolution of Salmonella CRISPR-Cas systems
N Shariat, RE Timme, JB Pettengill, R Barrangou, EG Dudley
Microbiology 161 (2), 374-386, 2015
1202015
Uncovering the evolutionary origin of plant molecular processes: comparison of Coleochaete (Coleochaetales) and Spirogyra (Zygnematales) transcriptomes
RE Timme, CF Delwiche
BMC Plant Biology 10, 1-12, 2010
992010
Listeria monocytogenes in stone fruits linked to a multistate outbreak: enumeration of cells and whole-genome sequencing
Y Chen, LS Burall, Y Luo, R Timme, D Melka, T Muruvanda, J Payne, ...
Applied and environmental microbiology 82 (24), 7030-7040, 2016
892016
Whole genome and core genome multilocus sequence typing and single nucleotide polymorphism analyses of Listeria monocytogenes isolates associated with an outbreak linked to …
Y Chen, Y Luo, H Carleton, R Timme, D Melka, T Muruvanda, C Wang, ...
Applied and environmental microbiology 83 (15), e00633-17, 2017
822017
Assessing the genome level diversity of Listeria monocytogenes from contaminated ice cream and environmental samples linked to a listeriosis outbreak in the …
Y Chen, Y Luo, P Curry, R Timme, D Melka, M Doyle, M Parish, ...
PLoS One 12 (2), e0171389, 2017
712017
Salmonella enterica phylogeny based on whole-genome sequencing reveals two new clades and novel patterns of horizontally acquired genetic elements
J Worley, J Meng, MW Allard, EW Brown, RE Timme
MBio 9 (6), 10.1128/mbio. 02303-18, 2018
692018
Resistome of carbapenem- and colistin-resistant Klebsiella pneumoniae clinical isolates
S Lomonaco, MA Crawford, C Lascols, RE Timme, K Anderson, ...
PLoS One 13 (6), e0198526, 2018
652018
Utilizing the Public GenomeTrakr Database for Foodborne Pathogen Traceback
RE Timme, MS Leon, MW Allard
Foodborne Bacterial Pathogens, 201-212, 2019
642019
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Artikler 1–20