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Aaron Petkau
Aaron Petkau
National Microbiology Laboratory, Public Health Agency of Canada
Verificeret mail på canada.ca
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Interactive microbial genome visualization with GView
A Petkau, M Stuart-Edwards, P Stothard, G Van Domselaar
Bioinformatics 26 (24), 3125-3126, 2010
3432010
CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database
BP Alcock, W Huynh, R Chalil, KW Smith, AR Raphenya, MA Wlodarski, ...
Nucleic acids research 51 (D1), D690-D699, 2023
2512023
Comparative genomics of Vibrio cholerae from Haiti, Asia, and Africa
AR Reimer, G Van Domselaar, S Stroika, M Walker, H Kent, C Tarr, ...
Emerging infectious diseases 17 (11), 2113, 2011
1902011
Surveillance of Enterococcus spp. reveals distinct species and antimicrobial resistance diversity across a One-Health continuum
R Zaheer, SR Cook, R Barbieri, N Goji, A Cameron, A Petkau, RO Polo, ...
Scientific reports 10 (1), 3937, 2020
1772020
SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology
A Petkau, P Mabon, C Sieffert, NC Knox, J Cabral, M Iskander, M Iskander, ...
Microbial genomics 3 (6), e000116, 2017
1402017
Evolutionary dynamics of Vibrio cholerae O1 following a single-source introduction to Haiti
LS Katz, A Petkau, J Beaulaurier, S Tyler, ES Antonova, MA Turnsek, ...
MBio 4 (4), 10.1128/mbio. 00398-13, 2013
138*2013
A comparative analysis of the Lyve-SET phylogenomics pipeline for genomic epidemiology of foodborne pathogens
LS Katz, T Griswold, AJ Williams-Newkirk, D Wagner, A Petkau, C Sieffert, ...
Frontiers in Microbiology 8, 248940, 2017
1232017
Correlation between Phenotypic and In Silico Detection of Antimicrobial Resistance in Salmonella enterica in Canada Using Staramr
A Bharat, A Petkau, BP Avery, JC Chen, JP Folster, CA Carson, ...
Microorganisms 10 (2), 292, 2022
662022
A primer on infectious disease bacterial genomics
T Lynch, A Petkau, N Knox, M Graham, G Van Domselaar
Clinical microbiology reviews 29 (4), 881-913, 2016
572016
Genomic insights from whole genome sequencing of four clonal outbreak Campylobacter jejuni assessed within the global C. jejuni population
CG Clark, C Berry, M Walker, A Petkau, DOR Barker, C Guan, A Reimer, ...
BMC genomics 17, 1-16, 2016
422016
The integrated rapid infectious disease analysis (IRIDA) platform
TC Matthews, FR Bristow, EJ Griffiths, A Petkau, J Adam, D Dooley, ...
BioRxiv, 381830, 2018
392018
SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology. Microb Genom 3: e000116
A Petkau, P Mabon, C Sieffert, NC Knox, J Cabral, M Iskander, M Iskander, ...
282017
A comparative analysis of the Lyve-SET phylogenomics pipeline for genomic epidemiology of foodborne pathogens. Front Microbiol 8: 375
LS Katz, T Griswold, AJ Williams-Newkirk, D Wagner, A Petkau, C Sieffert, ...
202017
Shared genome analyses of notable listeriosis outbreaks, highlighting the critical importance of epidemiological evidence, input datasets and interpretation criteria
A Reimer, K Weedmark, A Petkau, CL Peterson, M Walker, N Knox, ...
Microbial Genomics 5 (1), e000237, 2019
172019
Vibrio cholerae Outbreak Genomics Task Force. 2011. Comparative genomics of Vibrio cholerae from Haiti, Asia, and Africa
AR Reimer, G Van Domselaar, S Stroika, M Walker, H Kent, C Tarr, ...
Emerg. Infect. Dis 17, 2113-2121, 0
16
A multilocus sequence typing scheme for Mycobacterium abscessus complex (MAB-multilocus sequence typing) using whole-genome sequencing data
M Wuzinski, AK Bak, A Petkau, WHB Demczuk, H Soualhine, MK Sharma
The International Journal of Mycobacteriology 8 (3), 273-280, 2019
102019
Sequence database versioning for command line and Galaxy bioinformatics servers
DM Dooley, AJ Petkau, G Van Domselaar, WWL Hsiao
Bioinformatics 32 (8), 1275-1277, 2016
52016
Investigation of Two Mycobacterium abscessus Outbreaks in Quebec Using Whole Genome Sequencing
M Wuzinski, H Soualhine, E Valliere, PM Akochy, N Cloutier, A Petkau, ...
BioMed Research International 2020, 1-7, 2020
32020
A framework for the indexing, querying, clustering, and visualization of microbial genomes for surveillance and outbreak investigation
A Petkau
2022
Outbreak surveillance and investigation using IRIDA and SNVPhyl
A Petkau
2016
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Artikler 1–20