Sam Griffiths-Jones

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Alex BatemanHead of Protein Sequence Resources, EMBL-EBIVerified email at ebi.ac.uk
Sean R. EddyHHMI & Harvard UniversityVerified email at fas.harvard.edu
Robert D. FinnMicrobiome Informatics Team Leader, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambs, CB10 1SDVerified email at ebi.ac.uk
Anton EnrightProfessor of RNA Biology and Genomics, Pathology Dept., University of CambridgeVerified email at cam.ac.uk
Richard DurbinDept of Genetics, University of CambridgeVerified email at cam.ac.uk
Matthew RonshaugenUniversity of ManchesterVerified email at manchester.ac.uk
Simon MoxonAssociate Professor of Bioinformatics, University of East AngliaVerified email at uea.ac.uk
Harpreet SainiBioinformatician, European Bioinformatics InstituteVerified email at ebi.ac.uk
Stijn van DongenSenior Data Wrangler, ExpressionEdits, Cambridge UKVerified email at expressionedits.com
Antonio MarcoSenior Lecturer, University of EssexVerified email at essex.ac.uk
Paul P. GardnerUniversity of Otago, New ZealandVerified email at otago.ac.nz
Maria NinovaAssistant Professor, University of California RiversideVerified email at ucr.edu
Eric P NawrockiNational Center for Biotechnology Information (NCBI), NLM, NIHVerified email at ncbi.nlm.nih.gov
James C. CarringtonDonald Danforth Plant Science CenterVerified email at danforthcenter.org
Bonnie BartelProfessor, BioSciences, Biochemistry and Cell Biology, Rice UniversityVerified email at rice.edu
David BartelProfessor of Biology, HHMI, MIT, Whitehead InstituteVerified email at wi.mit.edu
Ewan BirneyDirector, EMBL-EBIVerified email at ebi.ac.uk
Lachlan CoinPeter Doherty Institute for Infection and Immunity and University of Melbourne Centre for CancerVerified email at unimelb.edu.au
Corin YeatsCentre for Genomic Pathogen Surveillance, BDI, OxfordVerified email at bdi.ox.ac.uk
David StudholmeUniversity of ExeterVerified email at exeter.ac.uk

Sam Griffiths-Jones

Faculty of Biology, Medicine and Health. University of Manchester

Verified email at manchester.ac.uk - Homepage

Computational Biology Genomics RNA microRNA


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miRBase: microRNA sequences, targets and gene nomenclature S Griffiths-Jones, RJ Grocock, S Van Dongen, A Bateman, AJ Enright Nucleic acids research 34 (suppl_1), D140-D144, 2006	5939	2006
miRBase: annotating high confidence microRNAs using deep sequencing data A Kozomara, S Griffiths-Jones Nucleic acids research 42 (D1), D68-D73, 2014	5887	2014
miRBase: tools for microRNA genomics S Griffiths-Jones, HK Saini, S van Dongen, AJ Enright Nucleic acids research 36 (suppl_1), D154-D158, 2007	5538	2007
miRBase: integrating microRNA annotation and deep-sequencing data A Kozomara, S Griffiths-Jones Nucleic acids research 39 (suppl 1), D152-D157, 2011	4594	2011
The Pfam protein families database A Bateman, L Coin, R Durbin, RD Finn, V Hollich, S Griffiths‐Jones, ... Nucleic acids research 32 (suppl_1), D138-D141, 2004	4267	2004
miRBase: from microRNA sequences to function A Kozomara, M Birgaoanu, S Griffiths-Jones Nucleic acids research 47 (D1), D155-D162, 2019	4165	2019
The microRNA registry S Griffiths‐Jones Nucleic acids research 32 (suppl_1), D109-D111, 2004	3160	2004
Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus Nature 438, 1151-1156, 2005	3054*	2005
Identification of mammalian microRNA host genes and transcription units A Rodriguez, S Griffiths-Jones, JL Ashurst, A Bradley Genome research 14 (10a), 1902-1910, 2004	2974	2004
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution LDW Hillier, W Miller, E Birney, W Warren, RC Hardison, CP Ponting, ... Nature 432 (7018), 695-716, 2004	2965	2004
The Pfam protein families database A Bateman, E Birney, L Cerruti, R Durbin, L Etwiller, SR Eddy, ... Nucleic acids research 30 (1), 276-280, 2002	2715	2002
Pfam: clans, web tools and services RD Finn, J Mistry, B Schuster-Böckler, S Griffiths-Jones, V Hollich, ... Nucleic acids research 34 (suppl_1), D247-D251, 2006	2694	2006
A uniform system for microRNA annotation V Ambros, B Bartel, DP Bartel, CB Burge, JC Carrington, X Chen, ... Rna 9 (3), 277-279, 2003	2616	2003
Evolution of genes and genomes on the Drosophila phylogeny AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ... Nature 450 (7167), 203-218, 2007	2280	2007
Rfam: an RNA family database S Griffiths-Jones, A Bateman, M Marshall, A Khanna, SR Eddy Nucleic acids research 31 (1), 439-441, 2003	1844	2003
Rfam: annotating non-coding RNAs in complete genomes S Griffiths-Jones, S Moxon, M Marshall, A Khanna, SR Eddy, A Bateman Nucleic acids research 33 (suppl_1), D121-D124, 2005	1793	2005
Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus WC Nierman, A Pain, MJ Anderson, JR Wortman, HS Kim, J Arroyo, ... Nature 438 (7071), 1151-1156, 2005	1695	2005
Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae JE Galagan, SE Calvo, C Cuomo, LJ Ma, JR Wortman, S Batzoglou, ... Nature 438 (7071), 1105-1115, 2005	1650	2005
Criteria for annotation of plant MicroRNAs BC Meyers, MJ Axtell, B Bartel, DP Bartel, D Baulcombe, JL Bowman, ... The Plant Cell 20 (12), 3186-3190, 2008	1315	2008
The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics LD Stein, Z Bao, D Blasiar, T Blumenthal, MR Brent, N Chen, A Chinwalla, ... PLoS biology 1 (2), e45, 2003	1131	2003

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