Sayoni Das
Sayoni Das
PrecisionLife Ltd.
Verified email at precisionlife.com - Homepage
Title
Cited by
Cited by
Year
CATH: comprehensive structural and functional annotations for genome sequences
I Sillitoe, TE Lewis, A Cuff, S Das, P Ashford, NL Dawson, N Furnham, ...
Nucleic acids research 43 (D1), D376-D381, 2015
4122015
CATH: an expanded resource to predict protein function through structure and sequence
NL Dawson, TE Lewis, S Das, JG Lees, D Lee, P Ashford, CA Orengo, ...
Nucleic acids research 45 (D1), D289-D295, 2017
2872017
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17 (1), 1-19, 2016
2782016
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20 (1), 1-23, 2019
932019
Functional classification of CATH superfamilies: a domain-based approach for protein function annotation
S Das, D Lee, I Sillitoe, NL Dawson, JG Lees, CA Orengo
Bioinformatics 31 (21), 3460-3467, 2015
752015
Gene3D: expanding the utility of domain assignments
SD Lam, NL Dawson, S Das, I Sillitoe, P Ashford, D Lee, S Lehtinen, ...
Nucleic acids research 44 (D1), D404-D409, 2016
662016
CATH: expanding the horizons of structure-based functional annotations for genome sequences
I Sillitoe, N Dawson, TE Lewis, S Das, JG Lees, P Ashford, A Tolulope, ...
Nucleic acids research 47 (D1), D280-D284, 2019
522019
Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis
JG Lees, D Lee, RA Studer, NL Dawson, I Sillitoe, S Das, C Yeats, ...
Nucleic acids research 42 (D1), D240-D245, 2014
482014
Emerging concepts in pseudoenzyme classification, evolution, and signaling
AJM Ribeiro, S Das, N Dawson, R Zaru, S Orchard, JM Thornton, ...
Science signaling 12 (594), 2019
422019
An overview of comparative modelling and resources dedicated to large-scale modelling of genome sequences
SD Lam, S Das, I Sillitoe, C Orengo
Acta Crystallographica Section D: Structural Biology 73 (8), 628-640, 2017
362017
CATH FunFHMMer web server: protein functional annotations using functional family assignments
S Das, I Sillitoe, D Lee, JG Lees, NL Dawson, J Ward, CA Orengo
Nucleic acids research 43 (W1), W148-W153, 2015
362015
Protein CoAlation and antioxidant function of coenzyme A in prokaryotic cells
Y Tsuchiya, A Zhyvoloup, J Baković, N Thomas, BYK Yu, S Das, C Orengo, ...
Biochemical Journal 475 (11), 1909-1937, 2018
352018
Diversity in protein domain superfamilies
S Das, NL Dawson, CA Orengo
Current opinion in genetics & development 35, 40-49, 2015
312015
The chemical formula of a magnetotactic bacterium
M Naresh, S Das, P Mishra, A Mittal
Biotechnology and bioengineering, 2012
312012
Novel computational protocols for functionally classifying and characterising serine beta-lactamases
D Lee, S Das, NL Dawson, D Dobrijevic, J Ward, C Orengo
PLoS computational biology 12 (6), e1004926, 2016
262016
Protein function annotation using protein domain family resources
S Das, CA Orengo
Methods 93, 24-34, 2016
262016
PDBe-KB: a community-driven resource for structural and functional annotations
M Varadi, J Berrisford, M Deshpande, SS Nair, A Gutmanas, D Armstrong, ...
Nucleic Acids Research 48 (D1), D344-D353, 2020
212020
Function diversity within folds and superfamilies
BH Dessailly, NL Dawson, S Das, CA Orengo
From protein structure to function with bioinformatics, 295-325, 2017
72017
Highlights of the 1st Student Symposium of the ISCB RSG UK
F Rahman, R Farmer, S Das, F Vayani, M Hassan
F1000Research 4, 2015
62015
Analysis of genetic host response risk factors in severe COVID-19 patients
K Taylor, S Das, M Pearson, J Kozubek, M Pawlowski, CE Jensen, ...
medRxiv, 2020
52020
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Articles 1–20