Følg
Ke Yuan
Ke Yuan
Senior Lecturer in Machine Learning and Computational Biology, University of Glasgow
Verificeret mail på glasgow.ac.uk - Startside
Titel
Citeret af
Citeret af
År
Pan-cancer analysis of whole genomes
Nature 578 (7793), 82-93, 2020
16122020
The evolutionary history of 2,658 cancers
M Gerstung, C Jolly, I Leshchiner, SC Dentro, S Gonzalez, D Rosebrock, ...
Nature 578 (7793), 122-128, 2020
9432020
Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ...
Cell 184 (8), 2239-2254. e39, 2021
3362021
BitPhylogeny: a probabilistic framework for reconstructing intra-tumor phylogenies
K Yuan, T Sakoparnig, F Markowetz, N Beerenwinkel
Genome biology 16, 1-16, 2015
1422015
Pathologygan: Learning deep representations of cancer tissue
AC Quiros, R Murray-Smith, K Yuan
arXiv preprint arXiv:1907.02644, 2019
952019
Spatial and temporal clonal evolution of intrahepatic cholangiocarcinoma
LQ Dong, Y Shi, LJ Ma, LX Yang, XY Wang, S Zhang, ZC Wang, M Duan, ...
Journal of hepatology 69 (1), 89-98, 2018
812018
A phylogenetic latent feature model for clonal deconvolution
F Marass, F Mouliere, K Yuan, N Rosenfeld, F Markowetz
The Annals of Applied Statistics, 2377-2404, 2016
562016
Inferring structural variant cancer cell fraction
M Cmero, K Yuan, CS Ong, J Schröder, NM Corcoran, T Papenfuss, ...
Nature communications 11 (1), 730, 2020
47*2020
Portraits of genetic intra-tumour heterogeneity and subclonal selection across cancer types
SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ...
BioRxiv, 312041, 2018
432018
BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes
I de Santiago, W Liu, K Yuan, M O’Reilly, CSR Chilamakuri, BAJ Ponder, ...
Genome biology 18, 1-17, 2017
342017
Online variational inference for state-space models with point-process observations
AZ Mangion, K Yuan, V Kadirkamanathan, M Niranjan, G Sanguinetti
Neural computation 23 (8), 1967-1999, 2011
242011
Markov chain Monte Carlo methods for state-space models with point process observations
K Yuan, M Girolami, M Niranjan
Neural Computation 24 (6), 1462-1486, 2012
222012
Adversarial learning of cancer tissue representations
A Claudio Quiros, N Coudray, A Yeaton, W Sunhem, R Murray-Smith, ...
Medical Image Computing and Computer Assisted Intervention–MICCAI 2021: 24th …, 2021
21*2021
Ccube: a fast and robust method for estimating cancer cell fractions
K Yuan, G Macintyre, W Liu, PCAWG-11 working group, F Markowetz
bioRxiv, 484402, 2018
172018
Reconstructing evolving signalling networks by hidden Markov nested effects models
X Wang, K Yuan, C Hellmayr, W Liu, F Markowetz
The Annals of Applied Statistics, 448-480, 2014
152014
Mutational signature dynamics indicate SARS-CoV-2’s evolutionary capacity is driven by host antiviral molecules
KD Lamb, MM Luka, M Saathoff, RJ Orton, MVT Phan, M Cotten, K Yuan, ...
PLoS computational biology 20 (1), e1011795, 2024
9*2024
Estimating a state-space model from point process observations: A note on convergence
K Yuan, M Niranjan
Neural computation 22 (8), 1993-2001, 2010
92010
Mapping the landscape of histomorphological cancer phenotypes using self-supervised learning on unannotated pathology slides
A Claudio Quiros, N Coudray, A Yeaton, X Yang, B Liu, H Le, L Chiriboga, ...
Nature Communications 15 (1), 4596, 2024
7*2024
Pervasive intra-tumour heterogeneity and subclonal selection across cancer types
S Dentro, I Leshchiner, K Haase, J Wintersinger, A Deshwar, M Tarabichi, ...
Cancer Research 78 (13_Supplement), 3000-3000, 2018
72018
Self-supervised learning reveals clinically relevant histomorphological patterns for therapeutic strategies in colon cancer
B Liu, M Polack, N Coudray, AC Quiros, T Sakellaropoulos, ...
bioRxiv, 2024
32024
Systemet kan ikke foretage handlingen nu. Prøv igen senere.
Artikler 1–20