Alicia Amadoz
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Cited by
Babelomics 5.0: functional interpretation for new generations of genomic data
R Alonso, F Salavert, F Garcia-Garcia, J Carbonell-Caballero, M Bleda, ...
Nucleic acids research 43 (W1), W117-W121, 2015
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ...
Nature communications 10 (1), 2674, 2019
The effects of death and post-mortem cold ischemia on human tissue transcriptomes
PG Ferreira, M Muñoz-Aguirre, F Reverter, CPS Godinho, A Sousa, ...
Nature Communications 9 (1), 490, 2018
Prediction of human population responses to toxic compounds by a collaborative competition
F Eduati, LM Mangravite, T Wang, H Tang, JC Bare, R Huang, T Norman, ...
Nature biotechnology 33 (9), 933, 2015
A Long Noncoding RNA Regulates Sister Chromatid Cohesion
FP Marchese, E Grossi, O Marín-Béjar, SK Bharti, I Raimondi, J González, ...
Molecular Cell, 2016
267 Spanish exomes reveal population-specific differences in disease-related genetic variation
J Dopazo, A Amadoz, M Bleda, L Garcia-Alonso, A Alemán, ...
Molecular biology and evolution 33 (5), 1205-1218, 2016
Understanding disease mechanisms with models of signaling pathway activities
P Sebastian-Leon, E Vidal, P Minguez, A Conesa, S Tarazona, A Amadoz, ...
BMC Systems Biology 8, 121, 2014
High throughput estimation of functional cell activities reveals disease mechanisms and predicts relevant clinical outcomes
MR Hidalgo, C Cubuk, A Amadoz, F Salavert, J Carbonell-Caballero, ...
Oncotarget 8 (3), 5160, 2017
Using activation status of signaling pathways as mechanism-based biomarkers to predict drug sensitivity
A Amadoz, P Sebastian-Leon, E Vidal, F Salavert, J Dopazo
Scientific Reports 5, 18494, 2015
Discovering the hidden sub-network component in a ranked list of genes or proteins derived from genomic experiments
L García-Alonso, R Alonso, E Vidal, A Amadoz, A de María, P Minguez, ...
Nucleic acids research 40 (20), e158-e158, 2012
A comparison of mechanistic signaling pathway activity analysis methods
A Amadoz, MR Hidalgo, C Çubuk, J Carbonell-Caballero, J Dopazo
Briefings in bioinformatics, 2018
Gene expression integration into pathway modules reveals a pan-cancer metabolic landscape
C Cubuk, MR Hidalgo, A Amadoz, MA Pujana, F Mateo, C Herranz, ...
Cancer research, canres. 2705.2017, 2018
Actionable pathways: interactive discovery of therapeutic targets using signaling pathway models
F Salavert, MR Hidago, A Amadoz, C Cubuk, I Medina, D Crespo, ...
Nucleic acids research 44 (W1), W212-W216, 2016
Models of cell signaling uncover molecular mechanisms of high-risk neuroblastoma and predict disease outcome
MR Hidalgo, A Amadoz, C Çubuk, J Carbonell-Caballero, J Dopazo
Biology direct 13 (1), 16, 2018
Differential metabolic activity and discovery of therapeutic targets using summarized metabolic pathway models
C Çubuk, MR Hidalgo, A Amadoz, K Rian, F Salavert, MA Pujana, ...
NPJ Systems Biology and Applications 5 (1), 7, 2019
epiPATH: an information system for the storage and management of molecular epidemiology data from infectious pathogens
A Amadoz, F González-Candelas
BMC infectious diseases 7 (1), 32, 2007
A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection
S Fourati, A Talla, M Mahmoudian, JG Burkhart, R Klén, R Henao, T Yu, ...
Nature Communications 9 (1), 4418, 2018
Crowdsourced Assessment of the of Predictability of Cancer Protein and Phosphoprotein Levels from Genomics and Transcriptomics
M Yang, F Petralia, Z Li, H Li, W Ma, X Song, S Kim, H Lee, H Yu, B Lee, ...
Cell Systems, 2020
Reference genome assessment from a population scale perspective: an accurate profile of variability and noise
J Carbonell-Caballero, A Amadoz, R Alonso, MR Hidalgo, C Çubuk, ...
Bioinformatics 33 (22), 3511-3517, 2017
A Novel Approach to Identify Candidate Prognostic Factors for Hepatitis C Treatment Response Integrating Clinical and Viral Genetic Data
A Amadoz, F González-Candelas
Evolutionary Bioinformatics 11, 15-24, 2015
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Articles 1–20