Christophe Dessimoz
Christophe Dessimoz
Associate Professor at UNIL, Professor at UCL
Bekræftet mail på ucl.ac.uk - Startside
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Phylogenetic ctDNA analysis depicts early-stage lung cancer evolution
C Abbosh, NJ Birkbak, GA Wilson, M Jamal-Hanjani, T Constantin, ...
Nature 545 (7655), 446-451, 2017
10002017
Towards practical, high-capacity, low-maintenance information storage in synthesized DNA
N Goldman, P Bertone, S Chen, C Dessimoz, EM LeProust, B Sipos, ...
Nature 494 (7435), 77-80, 2013
8002013
Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes
M Anisimova, M Gil, JF Dufayard, C Dessimoz, O Gascuel
Systematic biology 60 (5), 685-699, 2011
6542011
Allele-specific HLA loss and immune escape in lung cancer evolution
N McGranahan, R Rosenthal, CT Hiley, AJ Rowan, TBK Watkins, ...
Cell 171 (6), 1259-1271. e11, 2017
6052017
Approximate bayesian computation
M Sunnåker, AG Busetto, E Numminen, J Corander, M Foll, C Dessimoz
PLoS computational biology 9 (1), e1002803, 2013
4862013
Phylogenetic and functional assessment of orthologs inference projects and methods
AM Altenhoff, C Dessimoz
PLoS computational biology 5 (1), e1000262, 2009
4232009
GOATOOLS: A Python library for Gene Ontology analyses
DV Klopfenstein, L Zhang, BS Pedersen, F Ramírez, AW Vesztrocy, ...
Scientific reports 8 (1), 1-17, 2018
3152018
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D'Andrea, R Lepore, ...
Genome Biology 17, 184, 2016
3052016
OMA 2011: orthology inference among 1000 complete genomes
AM Altenhoff, A Schneider, GH Gonnet, C Dessimoz
Nucleic acids research 39 (suppl_1), D289-D294, 2010
2342010
Base-calling for next-generation sequencing platforms
C Ledergerber, C Dessimoz
Briefings in bioinformatics 12 (5), 489-497, 2011
2322011
Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast
DC Jeffares, C Jolly, M Hoti, D Speed, L Shaw, C Rallis, F Balloux, ...
Nature communications 8 (1), 1-11, 2017
2142017
The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements
AM Altenhoff, N Škunca, N Glover, CM Train, A Sueki, I Piližota, K Gori, ...
Nucleic acids research 43 (D1), D240-D249, 2015
2132015
Resolving the ortholog conjecture: orthologs tend to be weakly, but significantly, more similar in function than paralogs
AM Altenhoff, RA Studer, M Robinson-Rechavi, C Dessimoz
PLoS computational biology 8 (5), e1002514, 2012
2042012
Inferring horizontal gene transfer
M Ravenhall, N Škunca, F Lassalle, C Dessimoz
PLoS computational biology 11 (5), e1004095, 2015
1972015
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces
AM Altenhoff, NM Glover, CM Train, K Kaleb, A Warwick Vesztrocy, ...
Nucleic acids research 46 (D1), D477-D485, 2018
1872018
Algorithm of OMA for large-scale orthology inference
A Roth, G Gonnet, C Dessimoz
BMC Bioinformatics 9 (1), 518, 2008
1792008
Standardized benchmarking in the quest for orthologs
AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ...
Nature methods 13 (5), 425-430, 2016
1762016
The what, where, how and why of gene ontology—a primer for bioinformaticians
L Du Plessis, N Škunca, C Dessimoz
Briefings in bioinformatics 12 (6), 723-735, 2011
1662011
Current methods for automated filtering of multiple sequence alignments frequently worsen single-gene phylogenetic inference
G Tan, M Muffato, C Ledergerber, J Herrero, N Goldman, M Gil, ...
Systematic biology 64 (5), 778-791, 2015
1492015
SWPS3–fast multi-threaded vectorized Smith-Waterman for IBM Cell/BE and× 86/SSE2
A Szalkowski, C Ledergerber, P Krähenbühl, C Dessimoz
BMC research notes 1 (1), 1-4, 2008
1492008
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Artikler 1–20