Christophe Dessimoz

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Citations	13156	9353
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Adrian AltenhoffETH ZurichVerified email at inf.ethz.ch
Gaston H. GonnetProfessor Emeritus of Computer Science at the ETH ZurichVerified email at inf.ethz.ch
Natasha GloverSwiss Institute of Bioinformatics, University of LausanneVerified email at unil.ch
Manuel GilHead of Biomedical String Analysis, ZHAWVerified email at zhaw.ch
Alex Warwick VesztrocyUniversity of LausanneVerified email at warwickvesztrocy.co.uk
Nives SkuncaPostdoctoral Fellow, ETH ZürichVerified email at inf.ethz.ch
David DylusScientist, Systems Biology, RocheVerified email at roche.com
Nick GoldmanEMBL-European Bioinformatics InstituteVerified email at ebi.ac.uk
Maria AnisimovaHead of Applied Computational Genomics, ZHAWVerified email at zhaw.ch
Clément - Marie TrainPhD student, UNIL LausannneVerified email at unil.ch
Tarcisio Mendes De FariasSIB Swiss Institute of BioinformaticsVerified email at sib.swiss
Marc Robinson-RechaviProfessor of Bioinformatics, University of Lausanne and SIB Swiss Institute of BioinformaticsVerified email at unil.ch
Toni GabaldonGroup Leader, Institute for Research in Biomedicine (IRB) and Barcelona Supercomputing Centre (BSC)Verified email at crg.es
Henning RedestigData scientist, Genencor InternationalVerified email at iff.com
Fritz J SedlazeckHuman Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston TX 77030Verified email at bcm.edu
Daniel A. DalquenResearch Associate, University College LondonVerified email at ucl.ac.uk
David MoiUniversity of LaunanneVerified email at unil.ch
Telford MJUniversity College LondonVerified email at ucl.ac.uk
Jesualdo Tomás Fernández BreisProfessor, Universidad de Murcia, IMIB-ArrixacaVerified email at um.es
Jürg BählerProfessor of Systems Biology, University College LondonVerified email at ucl.ac.uk

Christophe Dessimoz

Professor at UNIL and Director of SIB Swiss Institute of Bioinformatics

Verified email at unil.ch - Homepage

Bioinformatics Computational Biology Phylogenetics Molecular Evolution Comparative Genomics


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Phylogenetic ctDNA analysis depicts early-stage lung cancer evolution C Abbosh, NJ Birkbak, GA Wilson, M Jamal-Hanjani, T Constantin, ... Nature 545 (7655), 446-451, 2017	1337	2017
Towards practical, high-capacity, low-maintenance information storage in synthesized DNA N Goldman, P Bertone, S Chen, C Dessimoz, EM LeProust, B Sipos, ... nature 494 (7435), 77-80, 2013	987	2013
Allele-specific HLA loss and immune escape in lung cancer evolution N McGranahan, R Rosenthal, CT Hiley, AJ Rowan, TBK Watkins, ... Cell 171 (6), 1259-1271. e11, 2017	873	2017
Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes M Anisimova, M Gil, JF Dufayard, C Dessimoz, O Gascuel Systematic biology 60 (5), 685-699, 2011	809	2011
Approximate bayesian computation M Sunnåker, AG Busetto, E Numminen, J Corander, M Foll, C Dessimoz PLoS computational biology 9 (1), e1002803, 2013	579	2013
GOATOOLS: A Python library for Gene Ontology analyses DV Klopfenstein, L Zhang, BS Pedersen, F Ramírez, A Warwick Vesztrocy, ... Scientific reports 8 (1), 1-17, 2018	528	2018
Phylogenetic and functional assessment of orthologs inference projects and methods AM Altenhoff, C Dessimoz PLoS computational biology 5 (1), e1000262, 2009	438	2009
An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D D'Andrea, R Lepore, ... Genome Biology 17, 184, 2016	358	2016
Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast DC Jeffares, C Jolly, M Hoti, D Speed, L Shaw, C Rallis, F Balloux, ... Nature communications 8 (1), 14061, 2017	342	2017
Structural variant calling: the long and the short of it M Mahmoud, N Gobet, DI Cruz-Dávalos, N Mounier, C Dessimoz, ... Genome biology 20 (1), 1-14, 2019	292	2019
Base-calling for next-generation sequencing platforms C Ledergerber, C Dessimoz Briefings in bioinformatics 12 (5), 489-497, 2011	263	2011
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome biology 20 (1), 1-23, 2019	247	2019
Inferring horizontal gene transfer M Ravenhall, N Škunca, F Lassalle, C Dessimoz PLoS computational biology 11 (5), e1004095, 2015	238	2015
OMA 2011: orthology inference among 1000 complete genomes AM Altenhoff, A Schneider, GH Gonnet, C Dessimoz Nucleic acids research 39 (suppl_1), D289-D294, 2010	237	2010
Resolving the ortholog conjecture: orthologs tend to be weakly, but significantly, more similar in function than paralogs AM Altenhoff, RA Studer, M Robinson-Rechavi, C Dessimoz PLoS computational biology 8 (5), e1002514, 2012	228	2012
The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements AM Altenhoff, N Škunca, N Glover, CM Train, A Sueki, I Piližota, K Gori, ... Nucleic acids research 43 (D1), D240-D249, 2015	222	2015
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces AM Altenhoff, NM Glover, CM Train, K Kaleb, A Warwick Vesztrocy, ... Nucleic acids research 46 (D1), D477-D485, 2018	214	2018
Standardized benchmarking in the quest for orthologs AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ... Nature methods 13 (5), 425-430, 2016	200	2016
Algorithm of OMA for large-scale orthology inference A Roth, G Gonnet, C Dessimoz BMC Bioinformatics 9 (1), 518, 2008	193	2008
Current methods for automated filtering of multiple sequence alignments frequently worsen single-gene phylogenetic inference G Tan, M Muffato, C Ledergerber, J Herrero, N Goldman, M Gil, ... Systematic biology 64 (5), 778-791, 2015	191	2015

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