Christophe Dessimoz

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Adrian AltenhoffETH ZurichVerified email at inf.ethz.ch
Gaston H. GonnetProfessor Emeritus of Computer Science at the ETH ZurichVerified email at inf.ethz.ch
Natasha GloverSwiss Institute of Bioinformatics, University of LausanneVerified email at unil.ch
Manuel GilSenior Researcher Lecturer at ZHAWVerified email at zhaw.ch
Nives SkuncaPostdoctoral Fellow, ETH ZürichVerified email at inf.ethz.ch
David DylusPostDoc, University of LausanneVerified email at unil.ch
Nick GoldmanEMBL-European Bioinformatics InstituteVerified email at ebi.ac.uk
Maria AnisimovaHead of Applied Computational Genomics, ZHAWVerified email at zhaw.ch
Clément - Marie TrainPhD student, UNIL LausannneVerified email at unil.ch
Toni GabaldonGroup Leader, Institute for Research in Biomedicine (IRB) and Barcelona Supercomputing Centre (BSC)Verified email at crg.es
Marc Robinson-RechaviProfessor of Bioinformatics, University of Lausanne and SIB Swiss Institute of BioinformaticsVerified email at unil.ch
Henning RedestigData scientist, Genencor InternationalVerified email at iff.com
Tarcisio Mendes De FariasSIB Swiss Institute of Bioinformatics, University of LausanneVerified email at sib.swiss
Daniel A. DalquenResearch Associate, University College LondonVerified email at ucl.ac.uk
Telford MJUniversity College LondonVerified email at ucl.ac.uk
Fritz J SedlazeckHuman Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston TX 77030Verified email at cshl.edu
Matthieu FollInternational Agency for Research on Cancer (IARC/WHO)Verified email at iarc.fr
Ivana PiližotaEMBL-EBIVerified email at ebi.ac.uk
Francois BallouxUCL Genetics Institute; University College LondonVerified email at ucl.ac.uk
Jürg BählerProfessor of Systems Biology, University College LondonVerified email at ucl.ac.uk

Christophe Dessimoz

SNSF Professor at UNIL, Professor at UCL

Verified email at ucl.ac.uk - Homepage

Bioinformatics Computational Biology Phylogenetics Molecular Evolution Comparative Genomics


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Phylogenetic ctDNA analysis depicts early-stage lung cancer evolution C Abbosh, NJ Birkbak, GA Wilson, M Jamal-Hanjani, T Constantin, ... Nature 545 (7655), 446-451, 2017	876	2017
Towards practical, high-capacity, low-maintenance information storage in synthesized DNA N Goldman, P Bertone, S Chen, C Dessimoz, EM LeProust, B Sipos, ... Nature 494 (7435), 77-80, 2013	736	2013
Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes M Anisimova, M Gil, JF Dufayard, C Dessimoz, O Gascuel Systematic biology 60 (5), 685-699, 2011	619	2011
Allele-specific HLA loss and immune escape in lung cancer evolution N McGranahan, R Rosenthal, CT Hiley, AJ Rowan, TBK Watkins, ... Cell 171 (6), 1259-1271. e11, 2017	534	2017
Approximate bayesian computation M Sunnåker, AG Busetto, E Numminen, J Corander, M Foll, C Dessimoz PLoS computational biology 9 (1), e1002803, 2013	461	2013
Phylogenetic and functional assessment of orthologs inference projects and methods AM Altenhoff, C Dessimoz PLoS computational biology 5 (1), e1000262, 2009	417	2009
An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D D'Andrea, R Lepore, ... Genome Biology 17, 184, 2016	288	2016
GOATOOLS: A Python library for Gene Ontology analyses DV Klopfenstein, L Zhang, BS Pedersen, F Ramírez, AW Vesztrocy, ... Scientific reports 8 (1), 1-17, 2018	258	2018
OMA 2011: orthology inference among 1000 complete genomes AM Altenhoff, A Schneider, GH Gonnet, C Dessimoz Nucleic acids research 39 (suppl_1), D289-D294, 2010	232	2010
Base-calling for next-generation sequencing platforms C Ledergerber, C Dessimoz Briefings in bioinformatics 12 (5), 489-497, 2011	219	2011
The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements AM Altenhoff, N Škunca, N Glover, CM Train, A Sueki, I Piližota, K Gori, ... Nucleic acids research 43 (D1), D240-D249, 2015	205	2015
Resolving the ortholog conjecture: orthologs tend to be weakly, but significantly, more similar in function than paralogs AM Altenhoff, RA Studer, M Robinson-Rechavi, C Dessimoz PLoS computational biology 8 (5), e1002514, 2012	191	2012
Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast DC Jeffares, C Jolly, M Hoti, D Speed, L Shaw, C Rallis, F Balloux, ... Nature communications 8 (1), 1-11, 2017	187	2017
Inferring horizontal gene transfer M Ravenhall, N Škunca, F Lassalle, C Dessimoz PLoS computational biology 11 (5), e1004095, 2015	183	2015
Algorithm of OMA for large-scale orthology inference A Roth, G Gonnet, C Dessimoz BMC Bioinformatics 9 (1), 518, 2008	173	2008
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces AM Altenhoff, NM Glover, CM Train, K Kaleb, A Warwick Vesztrocy, ... Nucleic acids research 46 (D1), D477-D485, 2018	171	2018
Standardized benchmarking in the quest for orthologs AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ... Nature methods 13 (5), 425-430, 2016	168	2016
The what, where, how and why of gene ontology—a primer for bioinformaticians L Du Plessis, N Škunca, C Dessimoz Briefings in bioinformatics 12 (6), 723-735, 2011	161	2011
SWPS3–fast multi-threaded vectorized Smith-Waterman for IBM Cell/BE and× 86/SSE2 A Szalkowski, C Ledergerber, P Krähenbühl, C Dessimoz BMC research notes 1 (1), 1-4, 2008	146	2008
OMA Browser—exploring orthologous relations across 352 complete genomes A Schneider, C Dessimoz, GH Gonnet Bioinformatics 23 (16), 2180-2182, 2007	144	2007

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