Thomas Girke
Thomas Girke
Professor of Bioinformatics
Verified email at - Homepage
Cited by
Cited by
Orchestrating high-throughput genomic analysis with Bioconductor
W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ...
Nature methods 12 (2), 115-121, 2015
The Vegetative Vacuole Proteome of Arabidopsis thaliana Reveals Predicted and Unexpected Proteins
C Carter, S Pan, J Zouhar, EL Avila, T Girke, NV Raikhel
The plant cell 16 (12), 3285-3303, 2004
Contrapuntal networks of gene expression during Arabidopsis seed filling
SA Ruuska, T Girke, C Benning, JB Ohlrogge
The Plant Cell 14 (6), 1191-1206, 2002
Cloning and characterization of microRNAs from rice
R Sunkar, T Girke, PK Jain, JK Zhu
The Plant Cell 17 (5), 1397-1411, 2005
Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis
A Mustroph, ME Zanetti, CJH Jang, HE Holtan, PP Repetti, DW Galbraith, ...
Proceedings of the National Academy of Sciences 106 (44), 18843-18848, 2009
WUSCHEL protein movement mediates stem cell homeostasis in the Arabidopsis shoot apex
RK Yadav, M Perales, J Gruel, T Girke, H Jönsson, GV Reddy
Genes & development 25 (19), 2025-2030, 2011
ChemMine tools: an online service for analyzing and clustering small molecules
TWH Backman, Y Cao, T Girke
Nucleic acids research 39 (suppl_2), W486-W491, 2011
Microarray analysis of developing Arabidopsis seeds
T Girke, J Todd, S Ruuska, J White, C Benning, J Ohlrogge
Plant Physiology 124 (4), 1570-1581, 2000
Translational dynamics revealed by genome-wide profiling of ribosome footprints in Arabidopsis
P Juntawong, T Girke, J Bazin, J Bailey-Serres
Proceedings of the National Academy of Sciences 111 (1), E203-E212, 2014
Differential mRNA translation contributes to gene regulation under non‐stress and dehydration stress conditions in Arabidopsis thaliana
R Kawaguchi, T Girke, EA Bray, J Bailey‐Serres
The Plant Journal 38 (5), 823-839, 2004
Gene expression map of the Arabidopsis shoot apical meristem stem cell niche
RK Yadav, T Girke, S Pasala, M Xie, GV Reddy
Proceedings of the National Academy of Sciences 106 (12), 4941-4946, 2009
ChemmineR: a compound mining framework for R
Y Cao, A Charisi, LC Cheng, T Jiang, T Girke
Bioinformatics 24 (15), 1733-1734, 2008
Identification of a novel D6‐acyl‐group desaturase by targeted gene disruption in Physcomitrella patens
T Girke, H Schmidt, U Zähringer, R Reski, E Heinz
The Plant Journal 15 (1), 39-48, 1998
A new set of Arabidopsis expressed sequence tags from developing seeds. The metabolic pathway from carbohydrates to seed oil
JA White, J Todd, T Newman, N Focks, T Girke, OM de Ilárduya, ...
Plant physiology 124 (4), 1582-1594, 2000
A maximum common substructure-based algorithm for searching and predicting drug-like compounds
Y Cao, T Jiang, T Girke
Bioinformatics 24 (13), i366-i374, 2008
Annotating genes of known and unknown function by large-scale coexpression analysis
K Horan, C Jang, J Bailey-Serres, R Mittler, C Shelton, JF Harper, JK Zhu, ...
Plant physiology 147 (1), 41-57, 2008
Tomato susceptibility to root-knot nematodes requires an intact jasmonic acid signaling pathway
KK Bhattarai, QG Xie, S Mantelin, U Bishnoi, T Girke, DA Navarre, ...
Molecular plant-microbe interactions 21 (9), 1205-1214, 2008
Arabidopsis lateral organ boundaries negatively regulates brassinosteroid accumulation to limit growth in organ boundaries
EM Bell, W Lin, AY Husbands, L Yu, V Jaganatha, B Jablonska, ...
Proceedings of the National Academy of Sciences 109 (51), 21146-21151, 2012
systemPipeR: NGS workflow and report generation environment
TWH Backman, T Girke
BMC bioinformatics 17, 1-8, 2016
Plant stem cell maintenance involves direct transcriptional repression of differentiation program
RK Yadav, M Perales, J Gruel, C Ohno, M Heisler, T Girke, H Jönsson, ...
Molecular systems biology 9 (1), 654, 2013
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