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Melanie Kirsche
Melanie Kirsche
Verified email at jhu.edu
Title
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Cited by
Year
The complete sequence of a human genome
S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ...
Science 376 (6588), 44-53, 2022
3942022
Major impacts of widespread structural variation on gene expression and crop improvement in tomato
M Alonge, X Wang, M Benoit, S Soyk, L Pereira, L Zhang, H Suresh, ...
Cell 182 (1), 145-161. e23, 2020
2772020
Paragraph: a graph-based structural variant genotyper for short-read sequence data
S Chen, P Krusche, E Dolzhenko, RM Sherman, R Petrovski, ...
Genome biology 20 (1), 1-13, 2019
762019
Benchmarking challenging small variants with linked and long reads
J Wagner, ND Olson, L Harris, Z Khan, J Farek, M Mahmoud, A Stankovic, ...
Cell Genomics 2 (5), 100128, 2022
482022
Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing
S Aganezov, S Goodwin, RM Sherman, FJ Sedlazeck, G Arun, S Bhatia, ...
Genome research 30 (9), 1258-1273, 2020
462020
A complete reference genome improves analysis of human genetic variation
S Aganezov, SM Yan, DC Soto, M Kirsche, S Zarate, P Avdeyev, ...
Science 376 (6588), eabl3533, 2022
442022
A diploid assembly-based benchmark for variants in the major histocompatibility complex
CS Chin, J Wagner, Q Zeng, E Garrison, S Garg, A Fungtammasan, ...
Nature communications 11 (1), 1-9, 2020
382020
Genomic diversity of SARS-CoV-2 during early introduction into the Baltimore–Washington metropolitan area
PM Thielen, S Wohl, T Mehoke, S Ramakrishnan, M Kirsche, ...
JCI insight 6 (6), 2021
262021
Automated assembly scaffolding elevates a new tomato system for high-throughput genome editing
M Alonge, L Lebeigle, M Kirsche, S Aganezov, X Wang, ZB Lippman, ...
BioRxiv, 2021
232021
Genomic diversity of SARS-CoV-2 during early introduction into the United States National Capital Region
PM Thielen, S Wohl, T Mehoke, S Ramakrishnan, M Kirsche, ...
MedRxiv, 2020
182020
Sapling: accelerating suffix array queries with learned data models
M Kirsche, A Das, MC Schatz
Bioinformatics 37 (6), 744-749, 2021
142021
Jasmine: Population-scale structural variant comparison and analysis
M Kirsche, G Prabhu, R Sherman, B Ni, S Aganezov, MC Schatz
BioRxiv, 2021
142021
Automated assembly of high-quality diploid human reference genomes
ED Jarvis, G Formenti, A Rhie, A Guarracino, C Yang, J Wood, A Tracey, ...
bioRxiv, 2022
112022
A complete human reference genome improves variant calling for population and clinical genomics
S Aganezov, SM Yan, DC Soto, M Kirsche, S Zarate, P Avdeyev, ...
bioRxiv (to appear), 2021
42021
Multi-tissue integrative analysis of personal epigenomes
J Rozowsky, J Drenkow, YT Yang, G Gursoy, T Galeev, B Borsari, ...
BioRxiv, 2021
42021
Democratizing long-read genome assembly
M Kirsche, MC Schatz
Cell Systems 12 (10), 945-947, 2021
12021
Computational Methods for Structural Variation Analysis in Populations
M Kirsche
Johns Hopkins University, 2022
2022
A complete reference genome improves long-read analysis of human genetic variation
S Aganezov, SM Yan, DC Soto, M Kirsche, S Zarate, P Avdeyev, ...
COMPUTATIONAL METHODS FOR STRUCTURAL VARIATION ANALYSIS IN POPULATIONS, 72, 2022
2022
Accelerating suffix array queries with learned data models
M Kirsche, A Das, MCS Sapling
COMPUTATIONAL METHODS FOR STRUCTURAL VARIATION ANALYSIS IN POPULATIONS, 17, 2022
2022
Comprehensive analysis of structural variants in breast cancer genomes using single molecule sequencing Supplemental Methods
S Aganezov, S Goodwin, RM Sherman, FJ Sedlazeck, G Arun, S Bhatia, ...
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