J.J. Emerson
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Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
LDW Hillier, W Miller, E Birney, W Warren, RC Hardison, CP Ponting, ...
Nature 432 (7018), 695-716, 2004
Extensive gene traffic on the mammalian X chromosome
JJ Emerson*, H Kaessmann*, E Betrán, M Long
Science 303 (5657), 537-540, 2004
Population Genomics of Sub-Saharan Drosophila melanogaster: African Diversity and Non-African Admixture
JE Pool, RB Corbett-Detig, RP Sugino, KA Stevens, CM Cardeno, ...
PLoS genetics 8 (12), e1003080, 2012
Contiguous and accurate de novo assembly of metazoan genomes with modest long read coverage
M Chakraborty*, JG Baldwin-Brown*, AD Long, JJ Emerson
Nucleic Acids Research 44 (19), e147-e147, 2016
Comparative sex chromosome genomics in snakes: differentiation, evolutionary strata, and lack of global dosage compensation
B Viçoso*, JJ Emerson*, Y Zektser, S Mahajan, D Bachtrog
PLoS Biol 11 (8), e1001643, 2013
Natural selection shapes genome-wide patterns of copy-number polymorphism in Drosophila melanogaster
JJ Emerson*, M Cardoso-Moreira*, JO Borevitz, M Long
Science 320 (5883), 1629-1631, 2008
Natural selection on cis and trans regulation in yeasts
JJ Emerson*, LC Hsieh*, HM Sung*, TY Wang*, CJ Huang, HHS Lu, ...
Genome Research 20 (6), 826-836, 2010
Models and data on plant-enemy coevolution
J Bergelson, G Dwyer, JJ Emerson
Annual Review of Genetics 35 (1), 469-499, 2001
Hidden genetic variation shapes the structure of functional elements in Drosophila
M Chakraborty, NW VanKuren, R Zhao, X Zhang, S Kalsow, JJ Emerson
Nature Genetics 50 (1), 20-25, 2018
Efficient population modification gene-drive rescue system in the malaria mosquito Anopheles stephensi
A Adolfi, VM Gantz, N Jasinskiene, HF Lee, K Hwang, G Terradas, ...
Nature Communications 11 (1), 1-13, 2020
Structural variants exhibit widespread allelic heterogeneity and shape variation in complex traits
M Chakraborty, JJ Emerson, SJ Macdonald, AD Long
Nature Communications 10 (1), 1-11, 2019
Inheritance of gene expression level and selective constraints on trans-and cis-regulatory changes in yeast
B Schaefke*, JJ Emerson*, TY Wang, MYJ Lu, LC Hsieh, WH Li
Molecular Biology and Evolution 30 (9), 2121-2133, 2013
Rapid low-cost assembly of the Drosophila melanogaster reference genome using low-coverage, long-read sequencing
EA Solares*, M Chakraborty*, DE Miller, S Kalsow, K Hall, AG Perera, ...
G3: Genes, Genomes, Genetics 8 (10), 3143-3154, 2018
The genetic basis of evolutionary change in gene expression levels
JJ Emerson, WH Li
Philosophical Transactions of the Royal Society B: Biological Sciences 365 …, 2010
Evolutionary genomics of structural variation in Asian rice (Oryza sativa) domestication
Y Kou*, Y Liao*, T Toivainen, Y Lv, X Tian, JJ Emerson, BS Gaut, Y Zhou
Molecular Biology and Evolution 37 (12), 3507-3524, 2020
Evolution of genome structure in the Drosophila simulans species complex
M Chakraborty*, CH Chang*, DE Khost, J Vedanayagam, JR Adrion, ...
Genome research 31 (3), 380-396, 2021
Genetic, genomic, and functional analysis of the granule lattice proteins in Tetrahymena secretory granules
AT Cowan*, GR Bowman*, KF Edwards, JJ Emerson, AP Turkewitz
Molecular Biology of the Cell 16 (9), 4046-4060, 2005
Sex chromosomes and male functions: where do new genes go?
E Betran, JJ Emerson, H Kaessmann, M Long
Cell Cycle 3 (7), 871-873, 2004
Drosophila Duplication Hotspots Are Associated with Late-Replicating Regions of the Genome
M Cardoso-Moreira, JJ Emerson, AG Clark, M Long
PLoS genetics 7 (11), e1002340, 2011
Genetically distinct coelacanth population off the northern Tanzanian coast
M Nikaido, T Sasaki, JJ Emerson, M Aibara, SI Mzighani, YL Budeba, ...
Proceedings of the National Academy of Sciences 108 (44), 18009-18013, 2011
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