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James Gurtowski
James Gurtowski
Cold Spring Harbor Laboratory
Verified email at columbia.edu
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Cited by
Year
GenomeScope: fast reference-free genome profiling from short reads
GW Vurture, FJ Sedlazeck, M Nattestad, CJ Underwood, H Fang, ...
Bioinformatics 33 (14), 2202-2204, 2017
8842017
KBase: the United States department of energy systems biology knowledgebase
AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ...
Nature biotechnology 36 (7), 566-569, 2018
7072018
The pineapple genome and the evolution of CAM photosynthesis
R Ming, R VanBuren, CM Wai, H Tang, MC Schatz, JE Bowers, E Lyons, ...
Nature genetics 47 (12), 1435-1442, 2015
4472015
Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome
S Goodwin, J Gurtowski, S Ethe-Sayers, P Deshpande, MC Schatz, ...
Genome research 25 (11), 1750-1756, 2015
4272015
Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica
MC Schatz, LG Maron, JC Stein, AH Wences, J Gurtowski, E Biggers, ...
Genome biology 15, 1-16, 2014
2932014
Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica
MC Schatz, LG Maron, JC Stein, AH Wences, J Gurtowski, E Biggers, ...
Genome biology 15, 1-16, 2014
2932014
Third-generation sequencing and the future of genomics
H Lee, J Gurtowski, S Yoo, M Nattestad, S Marcus, S Goodwin, ...
BioRxiv, 048603, 2016
1492016
Third-generation sequencing and the future of genomics
H Lee, J Gurtowski, S Yoo, M Nattestad, S Marcus, S Goodwin, ...
BioRxiv, 048603, 2016
1492016
Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line
M Nattestad, S Goodwin, K Ng, T Baslan, FJ Sedlazeck, P Rescheneder, ...
Genome research 28 (8), 1126-1135, 2018
1172018
Error correction and assembly complexity of single molecule sequencing reads
H Lee, J Gurtowski, S Yoo, S Marcus, WR McCombie, M Schatz
BioRxiv, 006395, 2014
1122014
Genome and transcriptome of the regeneration-competent flatworm, Macrostomum lignano
K Wasik, J Gurtowski, X Zhou, OM Ramos, MJ Delás, G Battistoni, ...
Proceedings of the National Academy of Sciences 112 (40), 12462-12467, 2015
922015
The DOE systems biology knowledgebase (KBase)
AP Arkin, RL Stevens, RW Cottingham, S Maslov, CS Henry, P Dehal, ...
BioRxiv, 096354, 2016
652016
Hybrid assembly with long and short reads improves discovery of gene family expansions
JR Miller, P Zhou, J Mudge, J Gurtowski, H Lee, T Ramaraj, BP Walenz, ...
BMC genomics 18, 1-12, 2017
552017
Genotyping in the cloud with crossbow
J Gurtowski, MC Schatz, B Langmead
Current protocols in bioinformatics 39 (1), 15.3. 1-15.3. 15, 2012
432012
Antibiotic pressure on the acquisition and loss of antibiotic resistance genes in Klebsiella pneumoniae
PJ Simner, AAR Antar, S Hao, J Gurtowski, PD Tamma, C Rock, ...
Journal of Antimicrobial Chemotherapy 73 (7), 1796-1803, 2018
382018
Conservation genomics of the declining North American bumblebee Bombus terricola reveals inbreeding and selection on immune genes
CF Kent, A Dey, H Patel, N Tsvetkov, T Tiwari, VJ MacPhail, Y Gobeil, ...
Frontiers in genetics 9, 316, 2018
332018
Dual functions of Macpiwi1 in transposon silencing and stem cell maintenance in the flatworm Macrostomum lignano
X Zhou, G Battistoni, O El Demerdash, J Gurtowski, J Wunderer, ...
RNA 21 (11), 1885-1897, 2015
272015
Molecular genetic diversity and characterization of conjugation genes in the fish parasite Ichthyophthirius multifiliis
E MacColl, MD Therkelsen, T Sherpa, H Ellerbrock, LA Johnston, ...
Molecular Phylogenetics and Evolution 86, 1-7, 2015
172015
Answering the demands of digital genomics
MA Titmus, J Gurtowski, MC Schatz
Concurrency and Computation: Practice and Experience 26 (4), 917-928, 2014
102014
Oxford Nanopore sequencing and de novo assembly of a eukaryotic genome
S Goodwin, J Gurtowski, S Ethe-Sayers, P Deshpande, M Schatz, ...
Genome Res 2015a 25, 1-7, 2016
72016
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