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Yifei (Yi-Fei) Huang
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Cited by
Year
Fast, scalable prediction of deleterious noncoding variants from functional and population genomic data
YF Huang, B Gulko, A Siepel
Nature Genetics 49 (4), 618-624, 2017
2642017
Is a super-enhancer greater than the sum of its parts?
N Dukler, B Gulko, YF Huang, A Siepel
Nature Genetics 49 (1), 2-3, 2017
692017
Robust high-performance nanoliter-volume single-cell multiple displacement amplification on planar substrates
K Leung, A Klaus, BK Lin, E Laks, J Biele, D Lai, A Bashashati, YF Huang, ...
Proceedings of the National Academy of Sciences 113 (30), 8484-8489, 2016
422016
Non-B DNA: a major contributor to small-and large-scale variation in nucleotide substitution frequencies across the genome
WM Guiblet, MA Cremona, RS Harris, D Chen, KA Eckert, F Chiaromonte, ...
Nucleic acids research 49 (3), 1497-1516, 2021
392021
Scikit-ribo enables accurate estimation and robust modeling of translation dynamics at codon resolution
H Fang, YF Huang, A Radhakrishnan, A Siepel, GJ Lyon, MC Schatz
Cell systems 6 (2), 180-191. e4, 2018
382018
PhastWeb: a web interface for evolutionary conservation scoring of multiple sequence alignments using phastCons and phyloP
R Ramani, K Krumholz, YF Huang, A Siepel
Bioinformatics 35 (13), 2320-2322, 2019
342019
Characterizing RNA stability genome-wide through combined analysis of PRO-seq and RNA-seq data
A Blumberg, Y Zhao, YF Huang, N Dukler, EJ Rice, AG Chivu, K Krumholz, ...
BMC biology 19 (1), 1-17, 2021
292021
Nascent RNA sequencing reveals a dynamic global transcriptional response at genes and enhancers to the natural medicinal compound celastrol
N Dukler, GT Booth, YF Huang, N Tippens, CT Waters, CG Danko, JT Lis, ...
Genome research 27 (11), 1816-1829, 2017
272017
Estimation of allele-specific fitness effects across human protein-coding sequences and implications for disease
YF Huang, A Siepel
Genome Research 29 (8), 1310-1321, 2019
232019
Phylogenetic Gaussian process model for the inference of functionally important regions in protein tertiary structures
YF Huang, GB Golding
PLoS computational biology 10 (1), e1003429, 2014
202014
Evidence against the energetic cost hypothesis for the short introns in highly expressed genes
YF Huang, DK Niu
BMC evolutionary biology 8 (1), 1-9, 2008
182008
FuncPatch: a web server for the fast Bayesian inference of conserved functional patches in protein 3D structures
YF Huang, GB Golding
Bioinformatics 31 (4), 523-531, 2015
172015
Inferring sequence regions under functional divergence in duplicate genes
YF Huang, GB Golding
Bioinformatics 28 (2), 176-183, 2012
122012
Selection and thermostability suggest G-quadruplexes are novel functional elements of the human genome
WM Guiblet, M DeGiorgio, X Cheng, F Chiaromonte, KA Eckert, YF Huang, ...
Genome research 31 (7), 1136-1149, 2021
102021
Unified inference of missense variant effects and gene constraints in the human genome
YF Huang
PLoS genetics 16 (7), e1008922, 2020
102020
Extreme purifying selection against point mutations in the human genome
N Dukler, MR Mughal, R Ramani, YF Huang, A Siepel
Nature communications 13 (1), 1-12, 2022
92022
Dissecting genomic determinants of positive selection with an evolution-guided regression model
YF Huang
Molecular biology and evolution 39 (1), msab291, 2022
72022
Phylogenetic modeling of regulatory element turnover based on epigenomic data
N Dukler, YF Huang, A Siepel
Molecular biology and evolution 37 (7), 2137-2152, 2020
72020
A deep learning framework for predicting human essential genes from population and functional genomic data
TM LaPolice, YF Huang
bioRxiv, 2021
2021
Mixture Density Regression reveals frequent recent adaptation in the human genome
DF Salazar-Tortosa, YF Huang, D Enard
bioRxiv, 2021
2021
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