Marc R. Friedländer

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Nikolaus RajewskyProfessor, Systems Biology, Max Delbruck Center for Molecular Medicine, BerlinVerified email at mdc-berlin.de
wei chenProfessor of Systems Biology, Southern University of Science and TechnologyVerified email at sustech.edu.cn
Xavier Estivill MD PhDqGenomics (Quantitative Genomics Laboratories)Verified email at qgenomics.com
Sebastian MackowiakMax Planck Institute for Molecular Genetics, BerlinVerified email at molgen.mpg.de
Wenjing KangPostdoctoral researcher, Karolinska Institutet; Science for Life LaboratoryVerified email at scilifelab.se
Bastian FrommThe Arctic University Museum of Norway, UiT - The Arctic University of NorwayVerified email at uit.no
Marcel TarbierKarolinska Institut, Science for Life Laboratory, Department of Microbiology, Tumor and Cell BiologyVerified email at scilifelab.se
Eulalia MartiAssociate Professor; Group LeaderVerified email at ub.edu
Michael HackenbergUniversidad de GranadaVerified email at ugr.es
Kevin J. PetersonDartmouth CollegeVerified email at dartmouth.edu
Azra KrekSenior Scientist, Mount Sinai School of MedicineVerified email at mssm.edu
Sébastien PfefferInstitut de Biologie Moléculaire et Cellulaire, CNRSVerified email at unistra.fr
Gunter MeisterUniversity of RegensburgVerified email at ur.de
Daniela BezdanVerified email at med.uni-tuebingen.de
Neus VisaStockholm UniversityVerified email at su.se
Tuuli LappalainenSciLifeLab, KTH Royal Institute of Technology & New York Genome CenterVerified email at nygenome.org
Roderic GuigoProfessor of Bioinformatics, Center for Genomic Regulation, Universitat Pompeu FabraVerified email at crg.cat
Andreas KellerProfessor for Clinical Bioinformatics, Center for Bioinformatics, Saarland Informatics CampusVerified email at ccb.uni-saarland.de
MarIon Stoeckius10x GenomicsVerified email at stoeckius.de
Matthew N PoyDepartment of Medicine, Johns Hopkins UniversityVerified email at jhmi.edu

Marc R. Friedländer

Associate Professor, Stockholm University / SciLifeLab

Verified email at scilifelab.se - Homepage

RNA biology computational biology single cells


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miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades MR Friedländer, SD Mackowiak, N Li, W Chen, N Rajewsky Nucleic acids research 40 (1), 37-52, 2012	2577	2012
Transcriptome and genome sequencing uncovers functional variation in humans T Lappalainen, M Sammeth, MR Friedländer, PAC ‘t Hoen, J Monlong, ... Nature 501 (7468), 506-511, 2013	1957	2013
Discovering microRNAs from deep sequencing data using miRDeep MR Friedländer, W Chen, C Adamidi, J Maaskola, R Einspanier, ... Nature biotechnology 26 (4), 407-415, 2008	1298	2008
A human snoRNA with microRNA-like functions C Ender, A Krek, MR Friedländer, M Beitzinger, L Weinmann, W Chen, ... Molecular cell 32 (4), 519-528, 2008	961	2008
Effect of predicted protein-truncating genetic variants on the human transcriptome MA Rivas, M Pirinen, DF Conrad, M Lek, EK Tsang, KJ Karczewski, ... Science 348 (6235), 666-669, 2015	316	2015
Evidence for the biogenesis of more than 1,000 novel human microRNAs MR Friedländer, E Lizano, AJS Houben, D Bezdan, M Báñez-Coronel, ... Genome biology 15, 1-17, 2014	309	2014
Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories PAC 't Hoen, MR Friedländer, J Almlöf, M Sammeth, I Pulyakhina, ... Nature biotechnology 31 (11), 1015-1022, 2013	257	2013
MirGeneDB 2.0: the metazoan microRNA complement B Fromm, D Domanska, E Høye, V Ovchinnikov, W Kang, ... Nucleic Acids Research 48 (D1), D132-D141, 2020	203	2020
High-resolution profiling and discovery of planarian small RNAs MR Friedländer, C Adamidi, T Han, S Lebedeva, TA Isenbarger, M Hirst, ... Proceedings of the National Academy of Sciences 106 (28), 11546-11551, 2009	160	2009
Large-scale sorting of C. elegans embryos reveals the dynamics of small RNA expression M Stoeckius, J Maaskola, T Colombo, HP Rahn, MR Friedländer, N Li, ... Nature methods 6 (10), 745-751, 2009	112	2009
EXOSC10 is required for RPA assembly and controlled DNA end resection at DNA double-strand breaks J Domingo-Prim, M Endara-Coll, F Bonath, S Jimeno, R Prados-Carvajal, ... Nature communications 10 (1), 2135, 2019	97	2019
Deciphering the porcine intestinal microRNA transcriptome S Sharbati, MR Friedländer, J Sharbati, L Hoeke, W Chen, A Keller, ... BMC genomics 11 (1), 1-14, 2010	91	2010
Survey of 800+ data sets from human tissue and body fluid reveals xenomiRs are likely artifacts W Kang, CH Bang-Berthelsen, A Holm, AJS Houben, AH Müller, ... Rna 23 (4), 433-445, 2017	77	2017
Global profiling of miRNAs and the hairpin precursors: insights into miRNA processing and novel miRNA discovery N Li, X You, T Chen, SD Mackowiak, MR Friedländer, M Weigt, H Du, ... Nucleic acids research 41 (6), 3619-3634, 2013	67	2013
Cytoplasmic protein misfolding titrates Hsp70 to activate nuclear Hsf1 AE Masser, W Kang, J Roy, J Mohanakrishnan Kaimal, ... Elife 8, e47791, 2019	66	2019
miR-184 regulates pancreatic β-cell function according to glucose metabolism SG Tattikota, T Rathjen, J Hausser, A Khedkar, UD Kabra, V Pandey, ... Journal of Biological Chemistry 290 (33), 20284-20294, 2015	64	2015
Select microRNAs are essential for early development in the sea urchin JL Song, M Stoeckius, J Maaskola, M Friedländer, N Stepicheva, ... Developmental biology 362 (1), 104-113, 2012	63	2012
A combined approach for single-cell mRNA and intracellular protein expression analysis J Reimegård, M Tarbier, M Danielsson, J Schuster, S Baskaran, ... Communications Biology 4 (1), 624, 2021	62	2021
Next-generation sequencing reveals two populations of damage-induced small RNAs at endogenous DNA double-strand breaks F Bonath, J Domingo-Prim, M Tarbier, MR Friedländer, N Visa Nucleic Acids Research 46 (22), 11869-11882, 2018	62	2018
MirGeneDB 2.1: toward a complete sampling of all major animal phyla B Fromm, E Høye, D Domanska, X Zhong, E Aparicio-Puerta, ... Nucleic Acids Research 50 (D1), D204-D210, 2022	58	2022

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