Marc R. Friedländer

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Nikolaus RajewskyProfessor, Systems Biology, Max Delbruck Center for Molecular Medicine, BerlinVerified email at mdc-berlin.de
wei chenProfessor of Systems Biology, Southern University of Science and TechnologyVerified email at sustech.edu.cn
Xavier Estivill MD PhDqGenomics (Quantitative Genomics Laboratories)Verified email at qgenomics.com
Sebastian MackowiakMax Planck Institute for Molecular Genetics, BerlinVerified email at molgen.mpg.de
Bastian FrommThe Arctic University Museum of Norway, UiT - The Arctic University of NorwayVerified email at uit.no
Wenjing KangPostdoctoral researcher, Karolinska Institutet; Science for Life LaboratoryVerified email at scilifelab.se
Marcel TarbierUppsala University, Science for Life Laboratory, Department of Immunology, Genetics and PathologyVerified email at scilifelab.se
Jonas MaaskolaWeizmann Institute of ScienceVerified email at weizmann.ac.il
Michael HackenbergUniversidad de GranadaVerified email at ugr.es
Eulalia MartiAssociate Professor; Group LeaderVerified email at ub.edu
Kevin J. PetersonDartmouth CollegeVerified email at dartmouth.edu
Eirik HøyeDepartment of Tumor Biology, Oslo Institute for Cancer ResearchVerified email at rr-research.no
Vaishnovi SekarPhD student, Stockholm UniversityVerified email at scilifelab.se
Franziska BonathKungliga Tekniska HögskolanVerified email at scilifelab.se
Azra KrekSenior Scientist, Mount Sinai School of MedicineVerified email at mssm.edu
Sébastien PfefferInstitut de Biologie Moléculaire et Cellulaire, CNRSVerified email at unistra.fr
Gunter MeisterUniversity of RegensburgVerified email at ur.de
Daniela BezdanVerified email at med.uni-tuebingen.de
Neus VisaStockholm UniversityVerified email at su.se
Tuuli LappalainenSciLifeLab, KTH Royal Institute of Technology & New York Genome CenterVerified email at nygenome.org

Marc R. Friedländer

Associate Professor, Stockholm University / SciLifeLab

Verified email at scilifelab.se - Homepage

RNA biology computational biology single cells


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miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades MR Friedländer, SD Mackowiak, N Li, W Chen, N Rajewsky Nucleic acids research 40 (1), 37-52, 2012	2908	2012
Transcriptome and genome sequencing uncovers functional variation in humans T Lappalainen, M Sammeth, MR Friedländer, PAC ‘t Hoen, J Monlong, ... Nature 501 (7468), 506-511, 2013	2120	2013
Discovering microRNAs from deep sequencing data using miRDeep MR Friedländer, W Chen, C Adamidi, J Maaskola, R Einspanier, ... Nature biotechnology 26 (4), 407-415, 2008	1352	2008
A human snoRNA with microRNA-like functions C Ender, A Krek, MR Friedländer, M Beitzinger, L Weinmann, W Chen, ... Molecular cell 32 (4), 519-528, 2008	1020	2008
Effect of predicted protein-truncating genetic variants on the human transcriptome MA Rivas, M Pirinen, DF Conrad, M Lek, EK Tsang, KJ Karczewski, ... Science 348 (6235), 666-669, 2015	364	2015
Evidence for the biogenesis of more than 1,000 novel human microRNAs MR Friedländer, E Lizano, AJS Houben, D Bezdan, M Báñez-Coronel, ... Genome biology 15, 1-17, 2014	338	2014
Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories PAC 't Hoen, MR Friedländer, J Almlöf, M Sammeth, I Pulyakhina, ... Nature biotechnology 31 (11), 1015-1022, 2013	276	2013
MirGeneDB 2.0: the metazoan microRNA complement B Fromm, D Domanska, E Høye, V Ovchinnikov, W Kang, ... Nucleic Acids Research 48 (D1), D132-D141, 2020	251	2020
High-resolution profiling and discovery of planarian small RNAs MR Friedländer, C Adamidi, T Han, S Lebedeva, TA Isenbarger, M Hirst, ... Proceedings of the National Academy of Sciences 106 (28), 11546-11551, 2009	167	2009
Large-scale sorting of C. elegans embryos reveals the dynamics of small RNA expression M Stoeckius, J Maaskola, T Colombo, HP Rahn, MR Friedländer, N Li, ... Nature methods 6 (10), 745-751, 2009	122	2009
MirGeneDB 2.1: toward a complete sampling of all major animal phyla B Fromm, E Høye, D Domanska, X Zhong, E Aparicio-Puerta, ... Nucleic acids research 50 (D1), D204-D210, 2022	111	2022
A combined approach for single-cell mRNA and intracellular protein expression analysis J Reimegård, M Tarbier, M Danielsson, J Schuster, S Baskaran, ... Communications biology 4 (1), 624, 2021	108	2021
EXOSC10 is required for RPA assembly and controlled DNA end resection at DNA double-strand breaks J Domingo-Prim, M Endara-Coll, F Bonath, S Jimeno, R Prados-Carvajal, ... Nature communications 10 (1), 2135, 2019	105	2019
Deciphering the porcine intestinal microRNA transcriptome S Sharbati, MR Friedländer, J Sharbati, L Hoeke, W Chen, A Keller, ... BMC genomics 11, 1-14, 2010	98	2010
Cytoplasmic protein misfolding titrates Hsp70 to activate nuclear Hsf1 AE Masser, W Kang, J Roy, J Mohanakrishnan Kaimal, ... Elife 8, e47791, 2019	89	2019
Survey of 800+ data sets from human tissue and body fluid reveals xenomiRs are likely artifacts W Kang, CH Bang-Berthelsen, A Holm, AJS Houben, AH Müller, ... Rna 23 (4), 433-445, 2017	83	2017
Next-generation sequencing reveals two populations of damage-induced small RNAs at endogenous DNA double-strand breaks F Bonath, J Domingo-Prim, M Tarbier, MR Friedländer, N Visa Nucleic acids research 46 (22), 11869-11882, 2018	75	2018
Global profiling of miRNAs and the hairpin precursors: insights into miRNA processing and novel miRNA discovery N Li, X You, T Chen, SD Mackowiak, MR Friedländer, M Weigt, H Du, ... Nucleic acids research 41 (6), 3619-3634, 2013	71	2013
Select microRNAs are essential for early development in the sea urchin JL Song, M Stoeckius, J Maaskola, M Friedländer, N Stepicheva, ... Developmental biology 362 (1), 104-113, 2012	70	2012
miRTrace reveals the organismal origins of microRNA sequencing data W Kang, Y Eldfjell, B Fromm, X Estivill, I Biryukova, MR Friedländer Genome biology 19, 1-15, 2018	68	2018

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