Shinjini Mukherjee

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Kim Yrjäläprofessor, Zhejiang Agriculture and Forestry UniversityVerified email at helsinki.fi
Luc De MeesterLeibniz Institute of Freshwater Ecology and Inland Fisheries & Freie Universität Berlin & KU LeuvenVerified email at kuleuven.be
Ellen DecaesteckerKU Leuven, Interdisciplinary Research Facility Life SciencesVerified email at kuleuven.be
Robby StoksFull professor Ecology and Evolution, KU LeuvenVerified email at kuleuven.be
Kristien I. BransProfessor in Biology @VUB Brussels, Belgium - postdoctoral researcher FWOVerified email at vub.be
Atya KapleyChief Scientist, National Environmental Engineering Research Institute, CSIR-NEERI, NagpurVerified email at neeri.res.in
Katarina BjörklöfFinnish Environment Institute SYKEVerified email at ymparisto.fi
Hemant PurohitHiMedia Microbiome Research Center (Former Head, Enviro. Biotech.& Genomics Div, CSIR-NEERI, India)Verified email at himedialabs.com
Kirsten JørgensenFinnish Environment Institute SYKEVerified email at ymparisto.fi
Sneha SagarkarDST-INSPIRE Faculty, Department of Zoology, SPPUVerified email at unipune.ac.in
Heli JuottonenData scientist, CSC - IT Center for Science / Docent in microbial ecology, University of JyväskyläVerified email at jyu.fi
Mark C. UrbanProfessor, University of ConnecticutVerified email at uconn.edu
Lynn GovaertGroup leader, Leibniz-Institute of Freshwater Ecology and Inland Fisheries, BerlinVerified email at igb-berlin.de
Laurens KilsdonkPhD-student, KU LeuvenVerified email at kuleuven.be
Héléne VanvelkKU LeuvenVerified email at kuleuven.be
Ondřej UhlíkUniversity of Chemistry and Technology, Prague; Laboratory of Microbial EcologyVerified email at vscht.cz
Michal StrejčekUniversity of Chemistry and Technology, PragueVerified email at vscht.cz
Eglantina Lopez-EcharteaPostdoctoral ResearcherVerified email at ndsu.edu
Muylaert KoenraadKU Leuven UniversityVerified email at kuleuven.be
Martijn CallensFlanders Research Institute for Agriculture, Fisheries and FoodVerified email at ilvo.vlaanderen.be

Shinjini Mukherjee

Department of Human Genetics, KU Leuven

Verified email at kuleuven.be - Homepage

Metagenomics Single-cell multi-omics Microbial Ecology Gut microbiome


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Spatial patterns of microbial diversity and activity in an aged creosote-contaminated site S Mukherjee, H Juottonen, P Siivonen, CL Quesada, P Tuomi, ... The ISME journal 8 (10), 2131-2142, 2014	102	2014
Analysing eco‐evolutionary dynamics—The challenging complexity of the real world L De Meester, KI Brans, L Govaert, C Souffreau, S Mukherjee, H Vanvelk, ... Functional Ecology 33 (1), 43-59, 2019	84	2019
Monitoring bioremediation of atrazine in soil microcosms using molecular tools S Sagarkar, S Mukherjee, A Nousiainen, K Björklöf, HJ Purohit, ... Environmental pollution 172, 108-115, 2013	80	2013
Bacterial succession in oil-contaminated soil under phytoremediation with poplars E Lopez-Echartea, M Strejcek, S Mukherjee, O Uhlik, K Yrjälä Chemosphere 243, 125242, 2020	40	2020
Locally adapted gut microbiomes mediate host stress tolerance S Houwenhuyse, R Stoks, S Mukherjee, E Decaestecker The ISME Journal 15 (8), 2401-2414, 2021	37	2021
The bacterioplankton community composition and a host genotype dependent occurrence of taxa shape the Daphnia magna gut bacterial community M Callens, L De Meester, K Muylaert, S Mukherjee, E Decaestecker FEMS Microbiology Ecology 96 (8), fiaa128, 2020	30	2020
Secondary succession of bacterial communities and co-occurrence of phylotypes in oil-polluted Populus rhizosphere S Mukherjee, M Heinonen, M Dequvire, T Sipilä, P Pulkkinen, K Yrjälä Soil Biology and Biochemistry 58, 188-197, 2013	25	2013
Atrazine degradation in boreal nonagricultural subsoil and tropical agricultural soil AO Nousiainen, K Björklöf, S Sagarkar, S Mukherjee, HJ Purohit, ... Journal of soils and sediments 14, 1179-1188, 2014	21	2014
Freshwater bacterioplankton metacommunity structure along urbanization gradients in Belgium FTT Hanashiro, S Mukherjee, C Souffreau, J Engelen, KI Brans, ... Frontiers in microbiology 10, 743, 2019	19	2019
Secondary successional trajectories of structural and catabolic bacterial communities in oil‐polluted soil planted with hybrid poplar S Mukherjee, T Sipilä, P Pulkkinen, K Yrjälä Molecular ecology 24 (3), 628-642, 2015	16	2015
Evolution of pesticide tolerance and associated changes in the microbiome in the water flea Daphnia magna L Janssens, M Van de Maele, V Delnat, C Theys, S Mukherjee, ... Ecotoxicology and Environmental Safety 240, 113697, 2022	7	2022
Successional and spatial patterns of bacterial communities in hydrocarbon-contaminated soils and Populus rhizosphere S Mukherjee Helsingin yliopisto, 2014	6	2014
Bacterioplankton Assembly Along a Eutrophication Gradient Is Mainly Structured by Environmental Filtering, Including Indirect Effects of Phytoplankton Composition FTT Hanashiro, L De Meester, M Vanhamel, S Mukherjee, AT Gianuca, ... Microbial ecology 85 (2), 400-410, 2023	5	2023
Rhizoremediation in cold climates K Yrjälä, TP Sipilä, S Mukherjee Psychrophiles: From Biodiversity to Biotechnology, 661-685, 2017	2	2017
Hierarchical eco-evo dynamics mediated by the gut microbiome E Decaestecker, B Van de Moortel, S Mukherjee, A Gurung, R Stoks, ... Trends in Ecology & Evolution, 2023	1	2023
Draft Genome Sequences of Five Carnobacterium sp. Strains Isolated from Freshwater Ponds in Belgium KJ Korzeniowski, S Mukherjee, C Souffreau Microbiology Resource Announcements 9 (25), 10.1128/mra. 00955-19, 2020	1	2020
Assembly processes of bacterioplankton communities in shallow lakes along anthropogenic gradients FT Taquicava Hanashiro		2022
Saastuneen maaperän in situ kunnostus phytoremediaatiolla ja sen seuranta K Yrjälä, T Sipilä, S Raju, P Pulkkinen, S Mukherjee VIII Maaperätieteiden päivien abstraktit/Toim. J. Leppälammi-Kujansuu, T …, 2015		2015
Alphaproteobacteria in soil: how are they prepared for hydrocarbon pollution? S Raju, S Mukherjee, K Yrjälä Pro Terra 61, 121-123, 2013		2013
Microbes as proxies for PAH pollution: case study of an old creosote polluted site in Southeastern Finland K Yrjälä, P Siivonen, CL Quesada, P Pulkkinen, S Mukherjee Pro Terra 61, 36-37, 2013		2013

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