|Platform-independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in skyline: application to protein acetylation and phosphorylation|
B Schilling, MJ Rardin, BX MacLean, AM Zawadzka, BE Frewen, ...
Molecular & Cellular Proteomics 11 (5), 202-214, 2012
|Direct high‐resolution peptide and protein analysis by desorption electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry|
MS Bereman, L Nyadong, FM Fernandez, DC Muddiman
Rapid Communications in Mass Spectrometry: An International Journal Devoted …, 2006
|The development of selected reaction monitoring methods for targeted proteomics via empirical refinement|
MS Bereman, B MacLean, DM Tomazela, DC Liebler, MJ MacCoss
Proteomics 12 (8), 1134-1141, 2012
|Development of a nanoLC LTQ orbitrap mass spectrometric method for profiling glycans derived from plasma from healthy, benign tumor control, and epithelial ovarian cancer patients|
MS Bereman, TI Williams, DC Muddiman
Analytical Chemistry 81 (3), 1130-1136, 2009
|Estimating relative abundances of proteins from shotgun proteomics data|
S McIlwain, M Mathews, MS Bereman, EW Rubel, MJ MacCoss, ...
BMC bioinformatics 13 (1), 308, 2012
|Effects of column and gradient lengths on peak capacity and peptide identification in nanoflow LC-MS/MS of complex proteomic samples|
EJ Hsieh, MS Bereman, S Durand, GA Valaskovic, MJ MacCoss
Journal of the American Society for Mass Spectrometry 24 (1), 148-153, 2012
|Comparison between procedures using SDS for shotgun proteomic analyses of complex samples|
MS Bereman, JD Egertson, MJ MacCoss
Proteomics 11 (14), 2931-2935, 2011
|Detection of attomole amounts of analyte by desorption electrospray ionization mass spectrometry (DESI-MS) determined using fluorescence spectroscopy|
MS Bereman, DC Muddiman
Journal of the American Society for Mass Spectrometry 18 (6), 1093-1096, 2007
|Increasing the hydrophobicity and electrospray response of glycans through derivatization with novel cationic hydrazides|
MS Bereman, DL Comins, DC Muddiman
Chemical communications 46 (2), 237-239, 2010
|Development of a Robust and High Throughput Method for Profiling N-Linked Glycans Derived from Plasma Glycoproteins by NanoLC−FTICR Mass Spectrometry|
MS Bereman, DD Young, A Deiters, DC Muddiman
Journal of proteome research 8 (7), 3764-3770, 2009
|Remote mass spectrometric sampling of electrospray-and desorption electrospray-generated ions using an air ejector|
RB Dixon, MS Bereman, DC Muddiman, AM Hawkridge
Journal of the American Society for Mass Spectrometry 18 (10), 1844-1847, 2007
|Carbohydrate analysis by desorption electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry|
MS Bereman, TI Williams, DC Muddiman
Analytical chemistry 79 (22), 8812-8815, 2007
|Implementation of statistical process control for proteomic experiments via LC MS/MS|
MS Bereman, R Johnson, J Bollinger, Y Boss, N Shulman, B MacLean, ...
Journal of the American Society for Mass Spectrometry 25 (4), 581-587, 2014
|Tools for monitoring system suitability in LC MS/MS centric proteomic experiments|
Proteomics 15 (5-6), 891-902, 2015
|Acetylation-induced TDP-43 pathology is suppressed by an HSF1-dependent chaperone program|
P Wang, CM Wander, CX Yuan, MS Bereman, TJ Cohen
Nature communications 8 (1), 1-15, 2017
|An automated pipeline to monitor system performance in liquid chromatography–tandem mass spectrometry proteomic experiments|
MS Bereman, J Beri, V Sharma, C Nathe, J Eckels, B MacLean, ...
Journal of proteome research 15 (12), 4763-4769, 2016
|Genomic and proteomic analysis of Schizaphis graminum reveals cyclophilin proteins are involved in the transmission of cereal yellow dwarf virus|
C Tamborindeguy, MS Bereman, S DeBlasio, D Igwe, DM Smith, F White, ...
PLoS One 8 (8), e71620, 2013
|Discovery and targeted LC-MS/MS of purified polerovirus reveals differences in the virus-host interactome associated with altered aphid transmission|
M Cilia, KA Peter, MS Bereman, K Howe, T Fish, D Smith, F Gildow, ...
PLoS One 7 (10), e48177, 2012
|C/EBPα regulates CRL4Cdt2-mediated degradation of p21 in response to UVB-induced DNA damage to control the G1/S checkpoint|
JR Hall, MS Bereman, AI Nepomuceno, EA Thompson, DC Muddiman, ...
Cell cycle 13 (22), 3602-3610, 2014
|Evaluation of front-end higher energy collision-induced dissociation on a benchtop dual-pressure linear ion trap mass spectrometer for shotgun proteomics|
MS Bereman, JD Canterbury, JD Egertson, J Horner, PM Remes, ...
Analytical chemistry 84 (3), 1533-1539, 2012