Michael Bereman
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Platform-independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in skyline: application to protein acetylation and phosphorylation
B Schilling, MJ Rardin, BX MacLean, AM Zawadzka, BE Frewen, ...
Molecular & Cellular Proteomics 11 (5), 202-214, 2012
Direct high‐resolution peptide and protein analysis by desorption electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry
MS Bereman, L Nyadong, FM Fernandez, DC Muddiman
Rapid Communications in Mass Spectrometry: An International Journal Devoted …, 2006
The development of selected reaction monitoring methods for targeted proteomics via empirical refinement
MS Bereman, B MacLean, DM Tomazela, DC Liebler, MJ MacCoss
Proteomics 12 (8), 1134-1141, 2012
Development of a nanoLC LTQ orbitrap mass spectrometric method for profiling glycans derived from plasma from healthy, benign tumor control, and epithelial ovarian cancer patients
MS Bereman, TI Williams, DC Muddiman
Analytical Chemistry 81 (3), 1130-1136, 2009
Estimating relative abundances of proteins from shotgun proteomics data
S McIlwain, M Mathews, MS Bereman, EW Rubel, MJ MacCoss, ...
BMC bioinformatics 13 (1), 308, 2012
Effects of column and gradient lengths on peak capacity and peptide identification in nanoflow LC-MS/MS of complex proteomic samples
EJ Hsieh, MS Bereman, S Durand, GA Valaskovic, MJ MacCoss
Journal of the American Society for Mass Spectrometry 24 (1), 148-153, 2012
Comparison between procedures using SDS for shotgun proteomic analyses of complex samples
MS Bereman, JD Egertson, MJ MacCoss
Proteomics 11 (14), 2931-2935, 2011
Detection of attomole amounts of analyte by desorption electrospray ionization mass spectrometry (DESI-MS) determined using fluorescence spectroscopy
MS Bereman, DC Muddiman
Journal of the American Society for Mass Spectrometry 18 (6), 1093-1096, 2007
Increasing the hydrophobicity and electrospray response of glycans through derivatization with novel cationic hydrazides
MS Bereman, DL Comins, DC Muddiman
Chemical communications 46 (2), 237-239, 2010
Development of a Robust and High Throughput Method for Profiling N-Linked Glycans Derived from Plasma Glycoproteins by NanoLC−FTICR Mass Spectrometry
MS Bereman, DD Young, A Deiters, DC Muddiman
Journal of proteome research 8 (7), 3764-3770, 2009
Remote mass spectrometric sampling of electrospray-and desorption electrospray-generated ions using an air ejector
RB Dixon, MS Bereman, DC Muddiman, AM Hawkridge
Journal of the American Society for Mass Spectrometry 18 (10), 1844-1847, 2007
Carbohydrate analysis by desorption electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry
MS Bereman, TI Williams, DC Muddiman
Analytical chemistry 79 (22), 8812-8815, 2007
Implementation of statistical process control for proteomic experiments via LC MS/MS
MS Bereman, R Johnson, J Bollinger, Y Boss, N Shulman, B MacLean, ...
Journal of the American Society for Mass Spectrometry 25 (4), 581-587, 2014
Tools for monitoring system suitability in LC MS/MS centric proteomic experiments
MS Bereman
Proteomics 15 (5-6), 891-902, 2015
Acetylation-induced TDP-43 pathology is suppressed by an HSF1-dependent chaperone program
P Wang, CM Wander, CX Yuan, MS Bereman, TJ Cohen
Nature communications 8 (1), 1-15, 2017
An automated pipeline to monitor system performance in liquid chromatography–tandem mass spectrometry proteomic experiments
MS Bereman, J Beri, V Sharma, C Nathe, J Eckels, B MacLean, ...
Journal of proteome research 15 (12), 4763-4769, 2016
Genomic and proteomic analysis of Schizaphis graminum reveals cyclophilin proteins are involved in the transmission of cereal yellow dwarf virus
C Tamborindeguy, MS Bereman, S DeBlasio, D Igwe, DM Smith, F White, ...
PLoS One 8 (8), e71620, 2013
Discovery and targeted LC-MS/MS of purified polerovirus reveals differences in the virus-host interactome associated with altered aphid transmission
M Cilia, KA Peter, MS Bereman, K Howe, T Fish, D Smith, F Gildow, ...
PLoS One 7 (10), e48177, 2012
C/EBPα regulates CRL4Cdt2-mediated degradation of p21 in response to UVB-induced DNA damage to control the G1/S checkpoint
JR Hall, MS Bereman, AI Nepomuceno, EA Thompson, DC Muddiman, ...
Cell cycle 13 (22), 3602-3610, 2014
Evaluation of front-end higher energy collision-induced dissociation on a benchtop dual-pressure linear ion trap mass spectrometer for shotgun proteomics
MS Bereman, JD Canterbury, JD Egertson, J Horner, PM Remes, ...
Analytical chemistry 84 (3), 1533-1539, 2012
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