Nadezhda T. Doncheva
Nadezhda T. Doncheva
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen
Verified email at cpr.ku.dk
Title
Cited by
Cited by
Year
The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
D Szklarczyk, JH Morris, H Cook, M Kuhn, S Wyder, M Simonovic, ...
Nucleic acids research, gkw937, 2016
41412016
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
D Szklarczyk, AL Gable, D Lyon, A Junge, S Wyder, J Huerta-Cepas, ...
Nucleic acids research 47 (D1), D607-D613, 2019
39732019
Topological analysis and interactive visualization of biological networks and protein structures
NT Doncheva, Y Assenov, FS Domingues, M Albrecht
Nature protocols 7 (4), 670, 2012
3912012
Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis
JZ Liu, JR Hov, T Folseraas, E Ellinghaus, SM Rushbrook, NT Doncheva, ...
Nature genetics 45 (6), 670-675, 2013
3192013
Cytoscape stringApp: Network analysis and visualization of proteomics data
NT Doncheva, JH Morris, J Gorodkin, LJ Jensen
Journal of proteome research 18 (2), 623-632, 2018
2952018
Analyzing and visualizing residue networks of protein structures
NT Doncheva, K Klein, FS Domingues, M Albrecht
Trends in biochemical sciences 36 (4), 179-182, 2011
2032011
Association between variants of PRDM1 and NDP52 and Crohn's disease, based on exome sequencing and functional studies
D Ellinghaus, H Zhang, S Zeissig, S Lipinski, A Till, T Jiang, B Stade, ...
Gastroenterology 145 (2), 339-347, 2013
1402013
Recent approaches to the prioritization of candidate disease genes
NT Doncheva, T Kacprowski, M Albrecht
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 4 (5), 429-442, 2012
592012
Viruses. STRING: A virus-host protein-protein interaction database
H Cook, N Doncheva, D Szklarczyk, C von Mering, L Jensen
Viruses 10 (10), 519, 2018
462018
NetworkPrioritizer: a versatile tool for network-based prioritization of candidate disease genes or other molecules
T Kacprowski, NT Doncheva, M Albrecht
Bioinformatics 29 (11), 1471-1473, 2013
422013
Profiling of Parkin-binding partners using tandem affinity purification
A Zanon, A Rakovic, H Blankenburg, NT Doncheva, C Schwienbacher, ...
PLoS ONE 8 (11), e78648, 2013
392013
Abundant Genetic Overlap between Blood Lipids and Immune-Mediated Diseases Indicates Shared Molecular Genetic Mechanisms
OA Andreassen, RS Desikan, Y Wang, WK Thompson, AJ Schork, ...
PLoS ONE 10 (4), 2015
372015
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
D Szklarczyk, AL Gable, KC Nastou, D Lyon, R Kirsch, S Pyysalo, ...
Nucleic Acids Research 49 (D1), D605-D612, 2021
212021
Visualize omics data on networks with Omics Visualizer, a Cytoscape App
M Legeay, NT Doncheva, JH Morris, LJ Jensen
F1000Research 9, 2020
142020
SetsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges
JH Morris, S Lotia, A Wu, NT Doncheva, M Albrecht, AR Pico, TE Ferrin
F1000Research 3, 2014
102014
setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges
JH Morris, S Lotia, A Wu, NT Doncheva, M Albrecht, AR Pico, TE Ferrin
F1000Research 3, 2014
102014
SetsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges
JH Morris, S Lotia, A Wu, NT Doncheva, M Albrecht, AR Pico, TE Ferrin
F1000Research 3, 2014
102014
Consistent prediction of mutation effect on drug binding in HIV-1 protease using alchemical calculations
T Bastys, V Gapsys, NT Doncheva, R Kaiser, BL de Groot, OV Kalinina
Journal of chemical theory and computation 14 (7), 3397-3408, 2018
92018
Integrative visual analysis of protein sequence mutations
NT Doncheva, K Klein, JH Morris, M Wybrow, FS Domingues, M Albrecht
BMC Proceedings 8 (Suppl 2), S2, 2014
92014
Proceedings of the EuBIC-MS 2020 Developers’ Meeting
C Ashwood, W Bittremieux, EW Deutsch, NT Doncheva, V Dorfer, ...
EuPA Open Proteomics 24, 1-6, 2020
22020
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