Laboratoire Microbiologie, Adaptation, Pathogénie, UMR CNRS 5240, Université Claude Bernard Lyon 1
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Structure of the rare archaeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters
M Hugoni, N Taib, D Debroas, I Domaizon, I Jouan Dufournel, G Bronner, ...
Proceedings of the National Academy of Sciences 110 (15), 6004-6009, 2013
Evidence for an active rare biosphere within freshwater protists community
D Debroas, M Hugoni, I Domaizon
Molecular Ecology 24 (6), 1236-1247, 2015
Plant host habitat and root exudates shape fungal diversity
M Hugoni, P Luis, J Guyonnet, FZ Haichar
Mycorrhiza 28, 451-463, 2018
Dynamics of ammonia-oxidizing Archaea and Bacteria in contrasted freshwater ecosystems
M Hugoni, S Etien, A Bourges, C Lepère, I Domaizon, C Mallet, G Bronner, ...
Research in Microbiology 164 (4), 360-370, 2013
Key role of alphaproteobacteria and cyanobacteria in the formation of stromatolites of Lake Dziani Dzaha (Mayotte, Western Indian Ocean)
E Gérard, S De Goeyse, M Hugoni, H Agogué, L Richard, V Milesi, ...
Frontiers in Microbiology 9, 796, 2018
Temporal dynamics of active Archaea in oxygen‐depleted zones of two deep lakes
M Hugoni, I Domaizon, N Taib, C Biderre‐Petit, H Agogué, PE Galand, ...
Environmental Microbiology Reports 7 (2), 321-329, 2015
Contrasted ecological niches shape fungal and prokaryotic community structure in mangroves sediments
P Luis, G Saint‐Genis, L Vallon, C Bourgeois, M Bruto, C Marchand, ...
Environmental microbiology 21 (4), 1407-1424, 2019
Diversity and dynamics of active small microbial eukaryotes in the anoxic zone of a freshwater meromictic lake (Pavin, France)
C Lepère, I Domaizon, M Hugoni, A Vellet, D Debroas
Frontiers in microbiology 7, 130, 2016
Diversity, spatial distribution and activity of fungi in freshwater ecosystems
C Lepère, I Domaizon, JF Humbert, L Jardillier, M Hugoni, D Debroas
PeerJ 7, e6247, 2019
Spatiotemporal variations in microbial diversity across the three domains of life in a tropical thalassohaline lake (Dziani Dzaha, Mayotte Island)
M Hugoni, A Escalas, C Bernard, S Nicolas, D Jezequel, F Vazzoler, ...
Molecular ecology 27 (23), 4775-4786, 2018
Very low phytoplankton diversity in a tropical saline-alkaline lake, with co-dominance of Arthrospira fusiformis (Cyanobacteria) and Picocystis salinarum (Chlorophyta)
C Bernard, A Escalas, N Villeriot, H Agogué, M Hugoni, C Duval, C Carré, ...
Microbial ecology 78, 603-617, 2019
Aedes albopictus mosquitoes host a locally structured mycobiota with evidence of reduced fungal diversity in invasive populations
P Luis, L Vallon, FH Tran, M Hugoni, V Tran-Van, P Mavingui, G Minard, ...
Fungal Ecology 39, 257-266, 2019
Temporal dynamics of active prokaryotic nitrifiers and archaeal communities from river to sea
M Hugoni, H Agogué, N Taib, I Domaizon, A Moné, PE Galand, G Bronner, ...
Microbial ecology 70, 473-483, 2015
Unique and highly variable bacterial communities inhabiting the surface microlayer of an oligotrophic lake
M Hugoni, A Vellet, D Debroas
Aquatic Microbial Ecology 79 (2), 115-125, 2017
Microbial ecology of tourist Paleolithic caves
Z Bontemps, L Alonso, T Pommier, M Hugoni, Y Moënne-Loccoz
Science of the Total Environment 816, 151492, 2022
Transient dynamics of archaea and bacteria in sediments and brine across a salinity gradient in a solar saltern of Goa, India
K Mani, N Taib, M Hugoni, G Bronner, JM Bragança, D Debroas
Frontiers in Microbiology 11, 1891, 2020
Diel rhythm does not shape the vertical distribution of bacterial and archaeal 16S rRNA transcript diversity in intertidal sediments: a mesocosm study
C Lavergne, M Hugoni, C Hubas, D Debroas, C Dupuy, H Agogué
Microbial ecology 75, 364-374, 2018
Geochemistry of an endorheic thalassohaline ecosystem: the Dziani Dzaha crater lake (Mayotte Archipelago, Indian Ocean)
G Sarazin, D Jézéquel, C Leboulanger, E Fouilland, E Le Floc’h, M Bouvy, ...
Comptes Rendus. Géoscience 352 (8), 559-577, 2020
First evidence of the presence and activity of archaeal C3 group members in an Atlantic intertidal mudflat
C Lavergne, M Hugoni, C Dupuy, H Agogué
Scientific Reports 8 (1), 11790, 2018
An experimental design to test the effect of wheat variety mixtures on biodiversity and ecosystem services
F Dubs, X Le Roux, V Allard, B Andrieu, S Barot, A Cantarel, ...
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