Sanne Abeln

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Jaap HeringaProfessor of Bioinformatics, Vrije Universiteit AmsterdamVerified email at vu.nl
Anton FeenstraAssistant professor of Bioinformatics, IBIVU Centre for Integrative Bioinformatics, VU UniversityVerified email at vu.nl
Remond J.A. FijnemanNetherlands Cancer Institute, Amsterdam, The NetherlandsVerified email at nki.nl
Gerrit A Meijerprofessor of oncologic pathology, Netherlands Cancer Institute, University Medical Center UtrechtVerified email at nki.nl
Erik van DijkPostdoctoral researcher, Amsterdam UMCVerified email at amsterdamumc.nl
Daan FrenkelUniversity of Cambridge, UKVerified email at cam.ac.uk
Charlotte DeaneProfessor of Structural Bioinformatics, Oxford UniversityVerified email at stats.ox.ac.uk
Ali MaySenior Associate Scientist at DSMVerified email at vu.nl
Halima MouhibAssistant ProfessorVerified email at vu.nl
Egija ZauraAcademic Centre for Dentistry AmsterdamVerified email at acta.nl
van de Wiel MAVerified email at vumc.nl
Punto BawonoThe Centre for Integrative Bioinformatics VU (IBIVU)Verified email at vu.nl
Michele VendruscoloProfessor of Biophysics, University of CambridgeVerified email at cam.ac.uk
René PoolDepartment of Biological Psychology, Faculty of Behavioural and Movement Sciences, VU UniversityVerified email at vu.nl
Ylstra BaukeVU University Medical CenterVerified email at vumc.nl
Annika JacobsenBioSemantics Group, Human Genetics, Leiden University Medical CenterVerified email at lumc.nl
Walter PirovanoResearch project manager, VU UniversityVerified email at vu.nl
Ran NiAssociate Professor, Nanyang Technological UniversityVerified email at ntu.edu.sg
Peter Bolhuisvan 't Hoff institute for Molecular Sciences, University of AmsterdamVerified email at uva.nl
Martien A. Cohen Stuarthoogleraar fysische chemie & koloidkunde, Wageningen universiteitVerified email at wur.nl

Sanne Abeln

Professor of AI Technology for Life, Utrecht University

Verified email at uu.nl - Homepage

AI for the Life Sciences Protein Bioinformatics Genomic Alterations Neurodegenerative Disease.


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The hydrophobic temperature dependence of amino acids directly calculated from protein structures E van Dijk, A Hoogeveen, S Abeln PLoS computational biology 11 (5), e1004277, 2015	117	2015
Comparing clustering and pre-processing in taxonomy analysis MJ Bonder, S Abeln, E Zaura, BW Brandt Bioinformatics, 2012	106	2012
A Simple Lattice Model That Captures Protein Folding, Aggregation and Amyloid Formation Abeln S., Vendruscolo M., Dobson C.M., Frenkel D. PLoS ONE 9 (1), e85185, 2014	75	2014
Disordered flanks prevent peptide aggregation S Abeln, D Frenkel PLoS computational biology 4 (12), e1000241, 2008	72	2008
How old is your fold? HF Winstanley, S Abeln, CM Deane Bioinformatics 21 (suppl_1), i449-i458, 2005	72	2005
Methods included MR Crusoe, S Abeln, A Iosup, P Amstutz, J Chilton, N Tijanić, H Ménager, ... Communications of the ACM 65 (6), 54-63, 2022	55	2022
Multiple Sequence Alignment P Bawono, M Dijkstra, W Pirovano, A Feenstra, S Abeln, J Heringa Bioinformatics: Volume I: Data, Sequence Analysis, and Evolution, 167-189, 2017	51	2017
Integrating Candida albicans metabolism with biofilm heterogeneity by transcriptome mapping R Rajendran, A May, L Sherry, R Kean, C Williams, BL Jones, KV Burgess, ... Scientific reports 6, 35436, 2016	51	2016
Coarse-grained versus atomistic simulations: realistic interaction free energies for real proteins A May, R Pool, E van Dijk, J Bijlard, S Abeln, J Heringa, KA Feenstra Bioinformatics 30 (3), 326-334, 2014	51	2014
The potential use of big data in oncology SM Willems, S Abeln, KA Feenstra, R de Bree, EF van der Poel, ... Oral oncology 98, 8-12, 2019	48	2019
Aurora kinase A (AURKA) interaction with Wnt and Ras-MAPK signalling pathways in colorectal cancer A Jacobsen, LJW Bosch, SR Martens-de Kemp, B Carvalho, ... Scientific Reports 8 (1), 7522, 2018	47	2018
High Prevalence and Clinical Relevance of Genes Affected by Chromosomal Breaks in Colorectal Cancer E van den Broek, MJJ Dijkstra, O Krijgsman, D Sie, JC Haan, JJH Traets, ... PloS one 10 (9), e0138141, 2015	43	2015
Fold usage on genomes and protein fold evolution S Abeln, CM Deane Proteins: Structure, Function, and Bioinformatics 60 (4), 690-700, 2005	41	2005
Interplay between folding and assembly of fibril-forming polypeptides R Ni, S Abeln, M Schor, MAC Stuart, PG Bolhuis Physical Review Letters 111 (5), 058101, 2013	39	2013
Consistent Treatment of Hydrophobicity in Protein Lattice Models Accounts for Cold Denaturation. E van Dijk, P Varilly, T Knowles, D Frenkel, S Abeln Physical review letters 116 (7), 078101, 2016	35	2016
Unraveling the outcome of 16S rDNA-based taxonomy analysis through mock data and simulations A May, S Abeln, W Crielaard, J Heringa, BW Brandt Bioinformatics 30 (11), 1530-1538, 2014	35	2014
The hydrophobic effect characterises the thermodynamic signature of amyloid fibril growth JHM van Gils, E van Dijk, A Peduzzo, A Hofmann, N Vettore, ... PLOS Computational Biology 16 (5), e1007767, 2020	31	2020
Exploring Fold Space Preferences of New-born and Ancient Protein Superfamilies H Edwards, S Abeln, CM Deane PLOS Computational Biology 9 (11), e1003325, 2013	30	2013
metaModules identifies key functional subnetworks in microbiome-related disease A May, BW Brandt, M El-Kebir, GW Klau, E Zaura, W Crielaard, J Heringa, ... Bioinformatics 32 (11), 1678-1685, 2016	27	2016
Accounting for Protein-Solvent Contacts Facilitates Design of Nonaggregating Lattice Proteins S Abeln, D Frenkel Biophysical journal 100 (3), 693-700, 2011	24	2011

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