Sanne Abeln
Sanne Abeln
Assistant Professor
Verified email at vu.nl - Homepage
Title
Cited by
Cited by
Year
Comparing clustering and pre-processing in taxonomy analysis
MJ Bonder, S Abeln, E Zaura, BW Brandt
Bioinformatics, 2012
872012
The hydrophobic temperature dependence of amino acids directly calculated from protein structures
E van Dijk, A Hoogeveen, S Abeln
PLoS computational biology 11 (5), e1004277, 2015
762015
How old is your fold?
HF Winstanley, S Abeln, CM Deane
Bioinformatics 21 (suppl_1), i449-i458, 2005
702005
Disordered flanks prevent peptide aggregation
S Abeln, D Frenkel
PLoS computational biology 4 (12), e1000241, 2008
642008
A Simple Lattice Model That Captures Protein Folding, Aggregation and Amyloid Formation
Abeln S., Vendruscolo M., Dobson C.M., Frenkel D.
PLoS ONE 9 (1), e85185, 2014
562014
High Prevalence and Clinical Relevance of Genes Affected by Chromosomal Breaks in Colorectal Cancer
E van den Broek, MJJ Dijkstra, O Krijgsman, D Sie, JC Haan, JJH Traets, ...
PloS one 10 (9), e0138141, 2015
372015
Coarse-grained versus atomistic simulations: realistic interaction free energies for real proteins
A May, R Pool, E van Dijk, J Bijlard, S Abeln, J Heringa, KA Feenstra
Bioinformatics 30 (3), 326-334, 2014
372014
Fold usage on genomes and protein fold evolution
S Abeln, CM Deane
Proteins: Structure, Function, and Bioinformatics 60 (4), 690-700, 2005
362005
Unraveling the outcome of 16S rDNA-based taxonomy analysis through mock data and simulations
A May, S Abeln, W Crielaard, J Heringa, BW Brandt
Bioinformatics 30 (11), 1530-1538, 2014
352014
Interplay between folding and assembly of fibril-forming polypeptides
R Ni, S Abeln, M Schor, MAC Stuart, PG Bolhuis
Physical Review Letters 111 (5), 058101, 2013
352013
Integrating Candida albicans metabolism with biofilm heterogeneity by transcriptome mapping
R Rajendran, A May, L Sherry, R Kean, C Williams, BL Jones, KV Burgess, ...
Scientific reports 6, 35436, 2016
332016
Consistent Treatment of Hydrophobicity in Protein Lattice Models Accounts for Cold Denaturation.
E van Dijk, P Varilly, T Knowles, D Frenkel, S Abeln
Physical review letters 116 (7), 078101, 2016
302016
Multiple Sequence Alignment
P Bawono, M Dijkstra, W Pirovano, A Feenstra, S Abeln, J Heringa
Bioinformatics: Volume I: Data, Sequence Analysis, and Evolution, 167-189, 2017
292017
Exploring Fold Space Preferences of New-born and Ancient Protein Superfamilies
H Edwards, S Abeln, CM Deane
PLOS Computational Biology 9 (11), e1003325, 2013
262013
Aurora kinase A (AURKA) interaction with Wnt and Ras-MAPK signalling pathways in colorectal cancer
A Jacobsen, LJW Bosch, SR Martens-de Kemp, B Carvalho, ...
Scientific Reports 8 (1), 7522, 2018
252018
Accounting for Protein-Solvent Contacts Facilitates Design of Nonaggregating Lattice Proteins
S Abeln, D Frenkel
Biophysical journal 100 (3), 693-700, 2011
222011
NGS-eval: NGS Error analysis and novel sequence VAriant detection tooL
A May, S Abeln, MJ Buijs, J Heringa, W Crielaard, BW Brandt
Nucleic acids research 43 (W1), W301-W305, 2015
212015
The potential use of big data in oncology
SM Willems, S Abeln, KA Feenstra, R de Bree, EF van der Poel, ...
Oral oncology 98, 8-12, 2019
202019
metaModules identifies key functional subnetworks in microbiome-related disease
A May, BW Brandt, M El-Kebir, GW Klau, E Zaura, W Crielaard, J Heringa, ...
Bioinformatics 32 (11), 1678-1685, 2016
202016
Mechanical Unfolding of an Autotransporter Passenger Protein Reveals the Secretion Starting Point and Processive Transport Intermediates
M Baclayon, P Ulsen, H Mouhib, MH Shabestari, T Verzijden, S Abeln, ...
ACS nano 10 (6), 5710-5719, 2016
152016
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