Sebastian Böcker
Sebastian Böcker
Professor für Bioinformatik, FSU Jena
Verified email at - Homepage
Cited by
Cited by
Searching molecular structure databases with tandem mass spectra using CSI:FingerID
K Dührkop, H Shen, M Meusel, J Rousu, S Böcker
Proceedings of the National Academy of Sciences 112 (41), 12580-12585, 2015
SIRIUS 4: a rapid tool for turning tandem mass spectra into metabolite structure information
K Dührkop, M Fleischauer, M Ludwig, AA Aksenov, AV Melnik, M Meusel, ...
Nature methods 16 (4), 299-302, 2019
SIRIUS: decomposing isotope patterns for metabolite identification
S Böcker, MC Letzel, Z Lipták, A Pervukhin
Bioinformatics 25 (2), 218-224, 2009
Feature-based molecular networking in the GNPS analysis environment
LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ...
Nature methods 17 (9), 905-908, 2020
Base-specific fragmentation of amplified 16S rRNA genes analyzed by mass spectrometry: a tool for rapid bacterial identification
F Von Wintzingerode, S Böcker, C Schlötelburg, NHL Chiu, N Storm, ...
Proceedings of the National Academy of Sciences 99 (10), 7039-7044, 2002
Computational mass spectrometry for metabolomics: identification of metabolites and small molecules
S Neumann, S Böcker
Analytical and bioanalytical chemistry 398 (7), 2779-2788, 2010
High-throughput MALDI-TOF discovery of genomic sequence polymorphisms
P Stanssens, M Zabeau, G Meersseman, G Remes, Y Gansemans, ...
Genome research 14 (1), 126-133, 2004
Fragmentation-based methods and systems for sequence variation detection and discovery
D Van Den Boom, S Boecker
US Patent 7,820,378, 2010
Computational mass spectrometry for small molecules
K Scheubert, F Hufsky, S Böcker
Journal of cheminformatics 5 (1), 1-24, 2013
Computing fragmentation trees from tandem mass spectrometry data
F Rasche, A Svatos, RK Maddula, C Böttcher, S Böcker
Analytical Chemistry 83 (4), 1243-1251, 2011
Exact algorithms for cluster editing: Evaluation and experiments
S Böcker, S Briesemeister, GW Klau
Algorithmica 60 (2), 316-334, 2011
Towards de novo identification of metabolites by analyzing tandem mass spectra
S Böcker, F Rasche
Bioinformatics 24 (16), i49-i55, 2008
Critical assessment of small molecule identification 2016: automated methods
EL Schymanski, C Ruttkies, M Krauss, C Brouard, T Kind, K Dührkop, ...
Journal of cheminformatics 9 (1), 1-21, 2017
Partitioning biological data with transitivity clustering
T Wittkop, D Emig, S Lange, S Rahmann, M Albrecht, JH Morris, S Böcker, ...
Nature methods 7 (6), 419-420, 2010
Simple but fundamental limitations on supertree and consensus tree methods
M Steel, AWM Dress, S Böcker
Syst Biol 49 (2), 363-368, 2000
Identifying the unknowns by aligning fragmentation trees
F Rasche, K Scheubert, F Hufsky, T Zichner, M Kai, A Svatoš, S Böcker
Analytical chemistry 84 (7), 3417-3426, 2012
Fragmentation trees reloaded
S Böcker, K Dührkop
Journal of cheminformatics 8 (1), 5, 2016
Significance estimation for large scale metabolomics annotations by spectral matching
K Scheubert, F Hufsky, D Petras, M Wang, LF Nothias, K Dührkop, ...
Nature Communications 8 (1), 1-10, 2017
Going weighted: Parameterized algorithms for cluster editing
S Böcker, S Briesemeister, QBA Bui, A Truß
Theoretical Computer Science 410 (52), 5467-5480, 2009
Computational mass spectrometry for small-molecule fragmentation
F Hufsky, K Scheubert, S Böcker
TrAC Trends in Analytical Chemistry 53, 41-48, 2014
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