| RNAmmer: consistent and rapid annotation of ribosomal RNA genes K Lagesen, P Hallin, EA Rødland, HH Stærfeldt, T Rognes, DW Ussery Nucleic acids research 35 (9), 3100-3108, 2007 | 5821 | 2007 |
| A scored human protein–protein interaction network to catalyze genomic interpretation T Li, R Wernersson, RB Hansen, H Horn, J Mercer, G Slodkowicz, ... Nature methods 14 (1), 61-64, 2017 | 608 | 2017 |
| Prediction of human protein function from post-translational modifications and localization features LJ Jensen, R Gupta, N Blom, D Devos, J Tamames, C Kesmir, H Nielsen, ... Journal of molecular biology 319 (5), 1257-1265, 2002 | 467 | 2002 |
| Pigs in sequence space: a 0.66 X coverage pig genome survey based on shotgun sequencing R Wernersson, MH Schierup, FG Jørgensen, J Gorodkin, F Panitz, ... BMC genomics 6, 1-7, 2005 | 383 | 2005 |
| Prediction of human protein function according to Gene Ontology categories LJ Jensen, R Gupta, HH Staerfeldt, S Brunak Bioinformatics 19 (5), 635-642, 2003 | 373 | 2003 |
| A DNA structural atlas for Escherichia coli AG Pedersen, LJ Jensen, S Brunak, HH Stærfeldt, DW Ussery Journal of molecular biology 299 (4), 907-930, 2000 | 269 | 2000 |
| RNammer: consistent annotation of rRNA genes in genomic sequences K Lagesen, PF Hallin, E Rødland, HH Stærfeldt, T Rognes, DW Ussery Nucleic Acids Res 35 (9), 3100-3108, 2007 | 263 | 2007 |
| A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts D Westergaard, HH Stærfeldt, C Tønsberg, LJ Jensen, S Brunak PLoS computational biology 14 (2), e1005962, 2018 | 195 | 2018 |
| Origin of replication in circular prokaryotic chromosomes P Worning, LJ Jensen, PF Hallin, HH Stærfeldt, DW Ussery Environmental microbiology 8 (2), 353-361, 2006 | 133 | 2006 |
| The Proteome of Seed Development in the Model Legume Lotus japonicus S Dam, BS Laursen, JH Ørnfelt, B Jochimsen, HH Stærfeldt, C Friis, ... Plant Physiology 149 (3), 1325-1340, 2009 | 99 | 2009 |
| Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags J Gorodkin, S Cirera, J Hedegaard, MJ Gilchrist, F Panitz, C Jørgensen, ... Genome biology 8, 1-16, 2007 | 84 | 2007 |
| Discovery of drug–omics associations in type 2 diabetes with generative deep-learning models RL Allesøe, AT Lundgaard, R Hernández Medina, A Aguayo-Orozco, ... Nature biotechnology 41 (3), 399-408, 2023 | 50 | 2023 |
| Proteome Analysis of Pod and Seed Development in the Model Legume Lotus japonicus G Nautrup-Pedersen, S Dam, BS Laursen, AL Siegumfeldt, K Nielsen, ... Journal of Proteome Research 9 (11), 5715-5726, 2010 | 41 | 2010 |
| MatrixPlot: visualizing sequence constraints. J Gorodkin, HH Stærfeldt, O Lund, S Brunak Bioinformatics (Oxford, England) 15 (9), 769-770, 1999 | 40 | 1999 |
| Bias of purine stretches in sequenced chromosomes D Ussery, DM Soumpasis, S Brunak, HH Stærfeldt, P Worning, A Krogh Computers & chemistry 26 (5), 531-541, 2002 | 39 | 2002 |
| Genetic studies of abdominal MRI data identify genes regulating hepcidin as major determinants of liver iron concentration HR Wilman, CA Parisinos, N Atabaki-Pasdar, M Kelly, EL Thomas, ... Journal of Hepatology 71 (3), 594-602, 2019 | 32 | 2019 |
| Genome Update: proteome comparisons TT Binnewies, PF Hallin, HH Stærfeldt, DW Ussery Microbiology 151 (1), 1-4, 2005 | 31 | 2005 |
| GeneWiz browser: an interactive tool for visualizing sequenced chromosomes PF Hallin, HH Stærfeldt, E Rotenberg, TT Binnewies, CJ Benham, ... Standards in genomic sciences 1, 204-215, 2009 | 21 | 2009 |
| FeatureMap3D—a tool to map protein features and sequence conservation onto homologous structures in the PDB R Wernersson, K Rapacki, HH Stærfeldt, PW Sackett, A Mølgaard Nucleic acids research 34 (suppl_2), W84-W88, 2006 | 20 | 2006 |
| The atlas visualization of genomewide information M Skovgaard, LJ Jensen, C Friis, HH Stærfeldt, P Worning, S Brunak, ... Methods in microbiology 33, 49-63, 2002 | 20 | 2002 |
