Thomas Nordahl Petersen

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Søren BrunakProfessor of Disease Systems Biology, University of CopenhagenVerificeret mail på cpr.ku.dk
Frank AarestrupTechnical University of Denmark, DTUVerificeret mail på food.dtu.dk
Gunnar von HeijneStockholm UniversityVerificeret mail på dbb.su.se
Ole LundTechnical University of DenmarkVerificeret mail på dtu.dk
Henrik NielsenAssociate Professor, Department of Health Technology, Technical University of DenmarkVerificeret mail på dtu.dk
Morten NielsenDepartment of Health Technology, The Technical University ofVerificeret mail på cbs.dtu.dk
Claus LundegaardVerificeret mail på cbs.dtu.dk
Nikolaj Sorgenfrei BlomSenior Researcher, DTUVerificeret mail på dtu.dk
Thomas Sicheritz-PontenProfessor in Computational Phage Biodiscovery, University of CopenhagenVerificeret mail på sund.ku.dk
Bent PetersenAssociate Professor, PhD, GLOBE institute, University of CopenhagenVerificeret mail på sund.ku.dk
Simon RasmussenAssociate Professor, University of CopenhagenVerificeret mail på cpr.ku.dk
Henrik Georg BohrAssociate Professor of Molecular Biophysics, Technical University of Denmark, Quantum Protein CenterVerificeret mail på fysik.dtu.dk
Jakob BohrProfessor, DTU Nanotech, Technical University of DenmarkVerificeret mail på nanotech.dtu.dk
Henrik M. Geertz-HansenNovozymesVerificeret mail på novozymes.com
Michael GajhedeProfessor i proteinkrystallografi, Københavns UniversitetVerificeret mail på sund.ku.dk
Martin F ThomsenPhD studentVerificeret mail på cbs.dtu.dk
Adam FeistUCSD / DTUVerificeret mail på ucsd.edu
Katrine SchjoldagerCopenhagen Center for Glycomics, University of CopenhagenVerificeret mail på sund.ku.dk
Ramneek GuptaTechnical University of DenmarkVerificeret mail på cbs.dtu.dk
Jose M G IzarzugazaNovo Nordisk, Bioinformatics and Data Mining DepartmentVerificeret mail på novonordisk.com

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Thomas Nordahl Petersen

DTU Food, National Food Institute, Denmark

Verificeret mail på food.dtu.dk

Metagenomics neural networks anti-microbial resistance


Titel Sortér efter henvisninger Sortér efter årstal Sortér efter titel	Citeret af Citeret af	År
SignalP 4.0: discriminating signal peptides from transmembrane regions TN Petersen, S Brunak, G Von Heijne, H Nielsen Nature methods 8 (10), 785-786, 2011	9636	2011
SignalP 5.0 improves signal peptide predictions using deep neural networks JJ Almagro Armenteros, KD Tsirigos, CK Sønderby, TN Petersen, ... Nature biotechnology 37 (4), 420-423, 2019	2913	2019
A generic method for assignment of reliability scores applied to solvent accessibility predictions B Petersen, TN Petersen, P Andersen, M Nielsen, C Lundegaard BMC structural biology 9, 1-10, 2009	694	2009
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage RS Hendriksen, P Munk, P Njage, B Van Bunnik, L McNally, ... Nature communications 10 (1), 1124, 2019	529	2019
CPHmodels-3.0—remote homology modeling using structure-guided sequence profiles M Nielsen, C Lundegaard, O Lund, TN Petersen Nucleic acids research 38 (suppl_2), W576-W581, 2010	427	2010
Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries P Munk, BE Knudsen, O Lukjancenko, ASR Duarte, L Van Gompel, ... Nature microbiology 3 (8), 898-908, 2018	218	2018
Prediction of protein secondary structure at 80% accuracy TN Petersen, C Lundegaard, M Nielsen, H Bohr, J Bohr, S Brunak, ... Proteins: Structure, Function, and Bioinformatics 41 (1), 17-20, 2000	201	2000
Detection of mobile genetic elements associated with antibiotic resistance in Salmonella enterica using a newly developed web tool: MobileElementFinder MHK Johansson, V Bortolaia, S Tansirichaiya, FM Aarestrup, AP Roberts, ... Journal of Antimicrobial Chemotherapy 76 (1), 101-109, 2021	194	2021
The crystal structure of rhamnogalacturonase A from Aspergillus aculeatus: a right-handed parallel β helix TN Petersen, S Kauppinen, S Larsen Structure 5 (4), 533-544, 1997	178	1997
Improved metagenome binning and assembly using deep variational autoencoders JN Nissen, J Johansen, RL Allesøe, CK Sønderby, JJA Armenteros, ... Nature biotechnology 39 (5), 555-560, 2021	146	2021
NetTurnP–neural network prediction of beta-turns by use of evolutionary information and predicted protein sequence features B Petersen, C Lundegaard, TN Petersen PloS one 5 (11), e15079, 2010	112	2010
A systematic study of site-specific GalNAc-type O-glycosylation modulating proprotein convertase processing KTBG Schjoldager, MB Vester-Christensen, CK Goth, TN Petersen, ... Journal of Biological Chemistry 286 (46), 40122-40132, 2011	106	2011
MGmapper: reference based mapping and taxonomy annotation of metagenomics sequence reads TN Petersen, O Lukjancenko, MCF Thomsen, M Maddalena Sperotto, ... PloS one 12 (5), e0176469, 2017	81	2017
Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance T Nordahl Petersen, S Rasmussen, H Hasman, C Carøe, J Bælum, ... Scientific reports 5 (1), 1-9, 2015	81	2015
Pancreatic spasmolytic polypeptide: first three-dimensional structure of a member of the mammalian trefoil family of peptides M Gajhede, TN Petersen, A Henriksen, JFW Petersen, Z Dauter, ... Structure 1 (4), 253-262, 1993	79	1993
Midbrain expression of Delta-like 1 homologue is regulated by GDNF and is associated with dopaminergic differentiation NS Christophersen, M Grønborg, TN Petersen, L Fjord-Larsen, ... Experimental neurology 204 (2), 791-801, 2007	68	2007
Norgal: extraction and de novo assembly of mitochondrial DNA from whole-genome sequencing data K Al-Nakeeb, TN Petersen, T Sicheritz-Pontén BMC bioinformatics 18, 1-7, 2017	62	2017
Cofactory: Sequence‐based prediction of cofactor specificity of Rossmann folds HM Geertz‐Hansen, N Blom, AM Feist, S Brunak, TN Petersen Proteins: Structure, Function, and Bioinformatics 82 (9), 1819-1828, 2014	50	2014
Proficiency Testing of Virus Diagnostics Based on Bioinformatics Analysis of Simulated In Silico High-Throughput Sequencing Data Sets A Brinkmann, A Andrusch, A Belka, C Wylezich, D Höper, A Pohlmann, ... Journal of clinical microbiology 57 (8), e00466-19, 2019	38	2019
Identification of novel genes regulated in the developing human ventral mesencephalon JR Jørgensen, B Juliusson, KF Henriksen, C Hansen, S Knudsen, ... Experimental neurology 198 (2), 427-437, 2006	26	2006

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