| Cross-resistance between clofazimine and bedaquiline through upregulation of MmpL5 in Mycobacterium tuberculosis RC Hartkoorn, S Uplekar, ST Cole Antimicrobial agents and chemotherapy 58 (5), 2979-2981, 2014 | 489 | 2014 |
| Towards a new tuberculosis drug: pyridomycin–nature's isoniazid RC Hartkoorn, C Sala, J Neres, F Pojer, S Magnet, R Mukherjee, ... EMBO molecular medicine 4 (10), 1032-1042, 2012 | 207 | 2012 |
| The PhoP-Dependent ncRNA Mcr7 Modulates the TAT Secretion System in Mycobacterium tuberculosis L Solans, J Gonzalo-Asensio, C Sala, A Benjak, S Uplekar, J Rougemont, ... PLoS pathogens 10 (5), e1004183, 2014 | 153 | 2014 |
| Virulence Regulator EspR of Mycobacterium tuberculosis Is a Nucleoid-Associated Protein B Blasco, JM Chen, R Hartkoorn, C Sala, S Uplekar, J Rougemont, ... PLoS pathogens 8 (3), e1002621, 2012 | 149 | 2012 |
| The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: a genotypic analysis TM Walker, P Miotto, CU Köser, PW Fowler, J Knaggs, Z Iqbal, M Hunt, ... The Lancet Microbe 3 (4), e265-e273, 2022 | 138 | 2022 |
| Spontaneous phthiocerol dimycocerosate-deficient variants of Mycobacterium tuberculosis are susceptible to gamma interferon-mediated immunity MA Kirksey, AD Tischler, R Siméone, KB Hisert, S Uplekar, C Guilhot, ... Infection and immunity 79 (7), 2829-2838, 2011 | 89 | 2011 |
| Comparative Genomics of esx Genes from Clinical Isolates of Mycobacterium tuberculosis Provides Evidence for Gene Conversion and Epitope Variation S Uplekar, B Heym, V Friocourt, J Rougemont, ST Cole Infection and immunity 79 (10), 4042-4049, 2011 | 80 | 2011 |
| A Point Mutation in cycA Partially Contributes to the D-cycloserine Resistance Trait of Mycobacterium bovis BCG Vaccine Strains JM Chen, S Uplekar, SV Gordon, ST Cole Public Library of Science 7 (8), e43467, 2012 | 75 | 2012 |
| Application of targeted next-generation sequencing assay on a portable sequencing platform for culture-free detection of drug-resistant tuberculosis from clinical samples AM Cabibbe, A Spitaleri, S Battaglia, RE Colman, A Suresh, S Uplekar, ... Journal of clinical microbiology 58 (10), 10.1128/jcm. 00632-20, 2020 | 73 | 2020 |
| A Comprehensive Survey of Single Nucleotide Polymorphisms (SNPs) across Mycobacterium bovis Strains and M. bovis BCG Vaccine Strains Refines the Genealogy and Defines a … MC Garcia Pelayo, S Uplekar, A Keniry, P Mendoza Lopez, T Garnier, ... Infection and immunity 77 (5), 2230-2238, 2009 | 71 | 2009 |
| Genome-wide definition of the SigF regulon in Mycobacterium tuberculosis RC Hartkoorn, C Sala, S Uplekar, P Busso, J Rougemont, ST Cole Journal of bacteriology 194 (8), 2001-2009, 2012 | 64 | 2012 |
| Primer-initiated sequence synthesis to detect and assemble structural variants A Massouras, K Hens, C Gubelmann, S Uplekar, F Decouttere, ... Nature methods 7 (7), 485-486, 2010 | 55 | 2010 |
| High-resolution detection of DNA binding sites of the global transcriptional regulator GlxR in Corynebacterium glutamicum B Jungwirth, C Sala, TA Kohl, S Uplekar, J Baumbach, ST Cole, A Pühler, ... Microbiology 159 (Pt_1), 12-22, 2013 | 53 | 2013 |
| A method for amplicon deep sequencing of drug resistance genes in Plasmodium falciparum clinical isolates from India PN Rao, S Uplekar, S Kayal, PK Mallick, N Bandyopadhyay, S Kale, ... Journal of clinical microbiology 54 (6), 1500-1511, 2016 | 52 | 2016 |
| High-resolution transcriptome and genome-wide dynamics of RNA polymerase and NusA in Mycobacterium tuberculosis S Uplekar, J Rougemont, ST Cole, C Sala Nucleic acids research 41 (2), 961-977, 2013 | 47 | 2013 |
| Characterizing antibody responses to Plasmodium vivax and Plasmodium falciparum antigens in India using genome-scale protein microarrays S Uplekar, PN Rao, L Ramanathapuram, V Awasthi, K Verma, P Sutton, ... PLoS neglected tropical diseases 11 (1), e0005323, 2017 | 31 | 2017 |
| Genomic and transcriptomic analysis of the streptomycin-dependent Mycobacterium tuberculosis strain 18b A Benjak, S Uplekar, M Zhang, J Piton, ST Cole, C Sala BMC genomics 17, 1-14, 2016 | 24 | 2016 |
| In silico evaluation of WHO-endorsed molecular methods to detect drug resistant tuberculosis A Brankin, M Seifert, SB Georghiou, TM Walker, S Uplekar, A Suresh, ... Scientific reports 12 (1), 17741, 2022 | 2 | 2022 |
| Antimalarial drug resistance profiling of Plasmodium falciparum infections in India using Ion Torrent deep sequencing S Kale, SM Uplekar, N Bandyopadhyay, PN Rao, SZ Ali, SK Sharma, ... Frontiers in Malaria 2, 1363969, 2024 | | 2024 |
| Ten simple rules for the sharing of bacterial genotype—Phenotype data on antimicrobial resistance L Chindelevitch, M van Dongen, H Graz, A Pedrotta, A Suresh, S Uplekar, ... PLoS Computational Biology 19 (6), e1011129, 2023 | | 2023 |
