Henrik Nielsen
Henrik Nielsen
Associate Professor, Department of Bio and Health Informatics, Technical University of Denmark
Verified email at bioinformatics.dtu.dk
TitleCited byYear
SignalP 4.0: discriminating signal peptides from transmembrane regions
TN Petersen, S Brunak, G von Heijne, H Nielsen
Nature methods 8 (10), 785, 2011
74212011
Improved prediction of signal peptides: SignalP 3.0
JD Bendtsen, H Nielsen, G von Heijne, S Brunak
Journal of molecular biology 340 (4), 783-795, 2004
72262004
Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.
H Nielsen, J Engelbrecht, S Brunak, G von Heijne
Protein engineering 10 (1), 1-6, 1997
62061997
Predicting subcellular localization of proteins based on their N-terminal amino acid sequence
O Emanuelsson, H Nielsen, S Brunak, G von Heijne
Journal of molecular biology 300 (4), 1005-1016, 2000
43922000
Locating proteins in the cell using TargetP, SignalP and related tools
O Emanuelsson, S Brunak, G von Heijne, H Nielsen
Nature protocols 2 (4), 953-971, 2007
31242007
Assessing the accuracy of prediction algorithms for classification: an overview
P Baldi, S Brunak, Y Chauvin, CAF Andersen, H Nielsen
Bioinformatics 16 (5), 412-424, 2000
19842000
ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites
O Emanuelsson, H Nielsen, G Von Heijne
Protein Science 8 (5), 978-984, 1999
17841999
Prediction of lipoprotein signal peptides in Gram‐negative bacteria
AS Juncker, H Willenbrock, G Von Heijne, S Brunak, H Nielsen, A Krogh
Protein science 12 (8), 1652-1662, 2003
10472003
A neural network method for identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites
H Nielsen, J Engelbrecht, S Brunak, G Von Heijne
International Journal of Neural Systems 8 (5-6), 581-599, 1997
7721997
Machine learning approaches for the prediction of signal peptides and other protein sorting signals
H Nielsen, S Brunak, G von Heijne
Protein Engineering 12 (1), 3-9, 1999
7101999
Prediction of signal peptides and signal anchors by a hidden Markov model.
H Nielsen, A Krogh
Ismb 6, 122-130, 1998
6651998
Prediction of twin-arginine signal peptides
J Bendtsen, H Nielsen, D Widdick, T Palmer, S Brunak
BMC bioinformatics 6 (1), 167, 2005
4992005
Prediction of human protein function from post-translational modifications and localization features
LJ Jensen, R Gupta, N Blom, D Devos, J Tamames, C Kesmir, H Nielsen, ...
Journal of Molecular Biology 319 (5), 1257-1265, 2002
3972002
Competition between Sec-and TAT-dependent protein translocation in Escherichia coli
S Cristóbal, JW de Gier, H Nielsen, G von Heijne
The EMBO journal 18 (11), 2982-2990, 1999
3311999
Predicting Secretory Proteins with SignalP
H Nielsen
Protein Function Prediction. Methods in Molecular Biology 1611, 59-73, 2017
3292017
Neural network prediction of translation initiation sites in eukaryotes: perspectives for EST and genome analysis.
AG Pedersen, H Nielsen
Ismb 5, 226-233, 1997
3291997
SignalP 5.0 improves signal peptide predictions using deep neural networks
JJA Armenteros, KD Tsirigos, CK Sønderby, TN Petersen, O Winther, ...
Nature biotechnology 37 (4), 420, 2019
1942019
DeepLoc: prediction of protein subcellular localization using deep learning
JJ Almagro Armenteros, CK Sønderby, SK Sønderby, H Nielsen, ...
Bioinformatics 33 (21), 3387-3395, 2017
1422017
LocTree3 prediction of localization
T Goldberg, M Hecht, T Hamp, T Karl, G Yachdav, N Ahmed, U Altermann, ...
Nucleic acids research 42 (W1), W350-W355, 2014
1382014
Metrics and similarity measures for hidden Markov models
RB Lyngso, CNS Pedersen, H Nielsen
Proceedings of ISMB 99, 178-186, 1999
981999
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Articles 1–20