Sol Katzman
Sol Katzman
UC Santa Cruz Genomics Institute
Verified email at
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An RNA gene expressed during cortical development evolved rapidly in humans
KS Pollard, SR Salama, N Lambert, MA Lambot, S Coppens, JS Pedersen, ...
Nature 443 (7108), 167, 2006
Forces shaping the fastest evolving regions in the human genome
KS Pollard, SR Salama, B King, AD Kern, T Dreszer, S Katzman, A Siepel, ...
PLoS genetics 2 (10), e168, 2006
FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing
JG Underwood, AV Uzilov, S Katzman, CS Onodera, JE Mainzer, ...
Nature methods 7 (12), 995, 2010
Human genome ultraconserved elements are ultraselected
S Katzman, AD Kern, G Bejerano, G Fewell, L Fulton, RK Wilson, ...
Science 317 (5840), 915-915, 2007
An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons
FMJ Jacobs, D Greenberg, N Nguyen, M Haeussler, AD Ewing, ...
Nature 516 (7530), 242, 2014
Human tRNA genes function as chromatin insulators
JR Raab, J Chiu, J Zhu, S Katzman, S Kurukuti, PA Wade, D Haussler, ...
The EMBO journal 31 (2), 330-350, 2012
Frac-seq reveals isoform-specific recruitment to polyribosomes
T Sterne-Weiler, RT Martinez-Nunez, JM Howard, I Cvitovik, S Katzman, ...
Genome research 23 (10), 1615-1623, 2013
Competition between pre-mRNAs for the splicing machinery drives global regulation of splicing
EM Munding, L Shiue, S Katzman, JP Donohue, M Ares
Molecular cell 51 (3), 338-348, 2013
Double minute chromosomes in glioblastoma multiforme are revealed by precise reconstruction of oncogenic amplicons
JZ Sanborn, SR Salama, M Grifford, CW Brennan, T Mikkelsen, ...
Cancer research 73 (19), 6036-6045, 2013
Ongoing GC-biased evolution is widespread in the human genome and enriched near recombination hot spots
S Katzman, JA Capra, D Haussler, KS Pollard
Genome biology and evolution 3, 614-626, 2011
Foxg1 coordinates the switch from nonradially to radially migrating glutamatergic subtypes in the neocortex through spatiotemporal repression
T Kumamoto, K Toma, WL McKenna, T Kasukawa, S Katzman, B Chen, ...
Cell reports 3 (3), 931-945, 2013
RNA-binding protein IGF2BP3 targeting of oncogenic transcripts promotes hematopoietic progenitor proliferation
JK Palanichamy, TM Tran, JM Howard, JR Contreras, TR Fernando, ...
The Journal of clinical investigation 126 (4), 1495-1511, 2016
Quaking promotes monocyte differentiation into pro-atherogenic macrophages by controlling pre-mRNA splicing and gene expression
RG De Bruin, L Shiue, J Prins, HC De Boer, A Singh, WS Fagg, ...
Nature communications 7, 10846, 2016
Mating of the stichotrichous ciliate Oxytricha trifallax induces production of a class of 27 nt small RNAs derived from the parental macronucleus
AM Zahler, ZT Neeb, A Lin, S Katzman
PLoS One 7 (8), e42371, 2012
TBR1 regulates autism risk genes in the developing neocortex
JH Notwell, WE Heavner, SF Darbandi, S Katzman, WL McKenna, ...
Genome research 26 (8), 1013-1022, 2016
Nuclear factor one B regulates neural stem cell differentiation and axonal projection of corticofugal neurons
J Betancourt, S Katzman, B Chen
Journal of Comparative Neurology 522 (1), 6-35, 2014
Mutual regulation between Satb2 and Fezf2 promotes subcerebral projection neuron identity in the developing cerebral cortex
WL McKenna, CF Ortiz-Londono, TK Mathew, K Hoang, S Katzman, ...
Proceedings of the National Academy of Sciences 112 (37), 11702-11707, 2015
IGF2BP3 modulates the interaction of invasion-associated transcripts with RISC
H Ennajdaoui, JM Howard, T Sterne-Weiler, F Jahanbani, DJ Coyne, ...
Cell reports 15 (9), 1876-1883, 2016
GC-biased evolution near human accelerated regions
S Katzman, AD Kern, KS Pollard, SR Salama, D Haussler
PLoS genetics 6 (5), e1000960, 2010
CRISPR/Cas-based screening of long non-coding RNAs (lncRNAs) in macrophages with an NF-κB reporter
S Covarrubias, EK Robinson, B Shapleigh, A Vollmers, S Katzman, ...
Journal of Biological Chemistry 292 (51), 20911-20920, 2017
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