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Moriya Yuki
Moriya Yuki
Database Center for Life Science
Verified email at dbcls.rois.ac.jp - Homepage
Title
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Cited by
Year
KAAS: an automatic genome annotation and pathway reconstruction server
Y Moriya, M Itoh, S Okuda, AC Yoshizawa, M Kanehisa
Nucleic acids research 35 (suppl_2), W182-W185, 2007
31482007
PathPred: an enzyme-catalyzed metabolic pathway prediction server
Y Moriya, D Shigemizu, M Hattori, T Tokimatsu, M Kotera, S Goto, ...
Nucleic acids research 38 (suppl_2), W138-W143, 2010
2392010
EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments
A Masoudi-Nejad, K Tonomura, S Kawashima, Y Moriya, M Suzuki, M Itoh, ...
Nucleic acids research 34 (suppl_2), W459-W462, 2006
1852006
KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters
A Nakaya, T Katayama, M Itoh, K Hiranuka, S Kawashima, Y Moriya, ...
Nucleic acids research 41 (D1), D353-D357, 2012
1182012
DINIES: drug–target interaction network inference engine based on supervised analysis
Y Yamanishi, M Kotera, Y Moriya, R Sawada, M Kanehisa, S Goto
Nucleic acids research 42 (W1), W39-W45, 2014
1072014
An automated system for evaluation of the potential functionome: MAPLE version 2.1. 0
H Takami, T Taniguchi, W Arai, K Takemoto, Y Moriya, S Goto
Dna Research 23 (5), 467-475, 2016
562016
Extracting sequence motifs and the phylogenetic features of SNARE‐dependent membrane traffic
AC Yoshizawa, S Kawashima, S Okuda, M Fujita, M Itoh, Y Moriya, ...
Traffic 7 (8), 1104-1118, 2006
542006
Evaluation method for the potential functionome harbored in the genome and metagenome
H Takami, T Taniguchi, Y Moriya, T Kuwahara, M Kanehisa, S Goto
BMC genomics 13 (1), 1-15, 2012
522012
GENIES: gene network inference engine based on supervised analysis
M Kotera, Y Yamanishi, Y Moriya, M Kanehisa, S Goto
Nucleic acids research 40 (W1), W162-W167, 2012
422012
EGENES: transcriptome-based plant database of genes with metabolic pathway information and expressed sequence tag indices in KEGG
A Masoudi-Nejad, S Goto, R Jauregui, M Ito, S Kawashima, Y Moriya, ...
Plant Physiology 144 (2), 857-866, 2007
402007
MAPLE 2.3. 0: an improved system for evaluating the functionomes of genomes and metagenomes
W Arai, T Taniguchi, S Goto, Y Moriya, H Uehara, K Takemoto, H Ogata, ...
Bioscience, biotechnology, and biochemistry 82 (9), 1515-1517, 2018
392018
KCF-S: KEGG Chemical Function and Substructure for improved interpretability and prediction in chemical bioinformatics
M Kotera, Y Tabei, Y Yamanishi, Y Moriya, T Tokimatsu, M Kanehisa, ...
BMC systems biology 7 (6), 1-17, 2013
312013
KAAS: KEGG automatic annotation server
Y Moriya, M Itoh, S Okuda, M Kanehisa
Genome Informatics 5, 2005, 2005
242005
Metabolome-scale prediction of intermediate compounds in multistep metabolic pathways with a recursive supervised approach
M Kotera, Y Tabei, Y Yamanishi, A Muto, Y Moriya, T Tokimatsu, S Goto
Bioinformatics 30 (12), i165-i174, 2014
192014
KEGG and GenomeNet, new developments, metagenomic analysis
M Kotera, Y Moriya, T Tokimatsu, M Kanehisa, S Goto
Encyclopedia of metagenomics, 329-339, 2015
162015
Identification of enzyme genes using chemical structure alignments of substrate–product pairs
Y Moriya, T Yamada, S Okuda, Z Nakagawa, M Kotera, T Tokimatsu, ...
Journal of chemical information and modeling 56 (3), 510-516, 2016
152016
PIERO ontology for analysis of biochemical transformations: effective implementation of reaction information in the IUBMB enzyme list
M Kotera, Y Nishimura, ZI Nakagawa, A Muto, Y Moriya, S Okamoto, ...
Journal of bioinformatics and computational biology 12 (06), 1442001, 2014
112014
TogoGenome/TogoStanza: modularized Semantic Web genome database
T Katayama, S Kawashima, S Okamoto, Y Moriya, H Chiba, Y Naito, ...
Database 2019, 2019
102019
BioHackathon 2015: Semantics of data for life sciences and reproducible research
RA Vos, T Katayama, H Mishima, S Kawano, S Kawashima, JD Kim, ...
F1000Research 9, 2020
62020
Analysis of a lipid biosynthesis protein family and phospholipid structural variations
M Tanaka, Y Moriya, S Goto, M Kanehisa
Genome Informatics 2009: Genome Informatics Series Vol. 22, 191-201, 2010
32010
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