Nives Skunca
Nives Skunca
Postdoctoral Fellow, ETH Zürich
Verified email at inf.ethz.ch - Homepage
Title
Cited by
Cited by
Year
REVIGO summarizes and visualizes long lists of gene ontology terms
F Supek, M Bošnjak, N Škunca, T Šmuc
PloS one 6 (7), e21800, 2011
34502011
A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
7622013
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17 (1), 1-19, 2016
2682016
The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements
AM Altenhoff, N Škunca, N Glover, CM Train, A Sueki, I Piližota, K Gori, ...
Nucleic acids research 43 (D1), D240-D249, 2015
2002015
Inferring horizontal gene transfer
M Ravenhall, N Škunca, F Lassalle, C Dessimoz
PLoS Comput Biol 11 (5), e1004095, 2015
1732015
The what, where, how and why of gene ontology—a primer for bioinformaticians
L Du Plessis, N Škunca, C Dessimoz
Briefings in bioinformatics 12 (6), 723-735, 2011
1592011
A transcriptomic-phylogenomic analysis of the evolutionary relationships of flatworms
B Egger, F Lapraz, B Tomiczek, S Müller, C Dessimoz, J Girstmair, ...
Current Biology 25 (10), 1347-1353, 2015
1222015
Quality of computationally inferred gene ontology annotations
N Škunca, A Altenhoff, C Dessimoz
PLoS Comput Biol 8 (5), e1002533, 2012
1152012
The draft genome sequence of the ferret (Mustela putorius furo) facilitates study of human respiratory disease
X Peng, J Alföldi, K Gori, AJ Eisfeld, SR Tyler, J Tisoncik-Go, D Brawand, ...
Nature biotechnology 32 (12), 1250-1255, 2014
912014
Translational selection is ubiquitous in prokaryotes
F Supek, N Škunca, J Repar, K Vlahoviček, T Šmuc
PLoS Genet 6 (6), e1001004, 2010
772010
Tests results strength and thermophysical properties of aerated concrete block wall samples with the use of polyurethane adhesive
GI Grinfeld, AS Gorshkov, NI Vatin
Advanced Materials Research 941, 786-799, 2014
712014
Primer on the gene ontology
P Gaudet, N Škunca, JC Hu, C Dessimoz
The Gene Ontology Handbook, 25-37, 2017
582017
Whole exome sequencing of rare aggressive breast cancer histologies
MV Dieci, V Smutná, V Scott, G Yin, R Xu, P Vielh, MC Mathieu, C Vicier, ...
Breast cancer research and treatment 156 (1), 21-32, 2016
50*2016
CAFA and the open world of protein function predictions
C Dessimoz, N Škunca, PD Thomas
Trends in Genetics 29 (11), 609-610, 2013
472013
The gene ontology handbook
C Dessimoz, N Škunca
Springer Nature, 2017
462017
Phyletic profiling with cliques of orthologs is enhanced by signatures of paralogy relationships
N Škunca, M Bošnjak, A Kriško, P Panov, S Džeroski, T Šmuc, F Supek
PLoS Comput Biol 9 (1), e1002852, 2013
442013
Polyketide synthase genes and the natural products potential of Dictyostelium discoideum
J Zucko, N Skunca, T Curk, B Zupan, PF Long, J Cullum, RH Kessin, ...
Bioinformatics 23 (19), 2543-2549, 2007
342007
The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations
FB Bastian, MC Chibucos, P Gaudet, M Giglio, GL Holliday, H Huang, ...
Database 2015, 2015
312015
The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases
SIB Swiss Institute of Bioinformatics Members
Nucleic acids research 44 (D1), D27-D37, 2016
252016
Phylogenetic profiling: how much input data is enough?
N Škunca, C Dessimoz
PloS one 10 (2), e0114701, 2015
232015
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Articles 1–20