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Sha (Joe) Zhu
Sha (Joe) Zhu
Roche Shanghai
Verificeret mail på roche.com - Startside
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Efficient ancestry and mutation simulation with msprime 1.0
F Baumdicker, G Bisschop, D Goldstein, G Gower, AP Ragsdale, ...
Genetics 220 (3), iyab229, 2022
2282022
scrm: efficiently simulating long sequences using the approximated coalescent with recombination
PR Staab, S Zhu, D Metzler, G Lunter
Bioinformatics, btu861, 2015
1042015
Towards practical and robust DNA-based data archiving using the yin–yang codec system
Z Ping, S Chen, G Zhou, X Huang, SJ Zhu, H Zhang, HH Lee, Z Lan, J Cui, ...
Nature Computational Science 2 (4), 234-242, 2022
79*2022
Deconvolution of multiple infections in Plasmodium falciparum from high throughput sequencing data
SJ Zhu, J Almagro-Garcia, G McVean
Bioinformatics, btx530, 2017
742017
Carbon-based archiving: current progress and future prospects of DNA-based data storage
Z Ping, D Ma, X Huang, S Chen, L Liu, F Guo, SJ Zhu, Y Shen
GigaScience 8 (6), giz075, 2019
652019
Genomic Analysis of Plasmodium vivax in Southern Ethiopia Reveals Selective Pressures in Multiple Parasite Mechanisms
S Auburn, S Getachew, RD Pearson, R Amato, O Miotto, H Trimarsanto, ...
The Journal of infectious diseases 220 (11), 1738-1749, 2019
642019
The origins and relatedness structure of mixed infections vary with local prevalence of P. falciparum malaria
SJ Zhu, JA Hendry, J Almagro-Garcia, RD Pearson, R Amato, A Miles, ...
Elife 8, e40845, 2019
572019
RTS,S/AS01 malaria vaccine mismatch observed among Plasmodium falciparum isolates from southern and central Africa and globally
JC Pringle, G Carpi, J Almagro-Garcia, SJ Zhu, T Kobayashi, M Mulenga, ...
Scientific Reports 8, 2018
542018
Displayed Trees Do Not Determine Distinguishability Under the Network Multispecies Coalescent
S Zhu, JH Degnan
Systematic Biology 66 (2), 283-298, 2017
462017
Hybrid-Lambda: simulation of multiple merger and Kingman gene genealogies in species networks and species trees
S Zhu, JH Degnan, SJ Goldstien, B Eldon
BMC Bioinformatics 16 (292), 2015
402015
Neonatal microRNA profile determines endothelial function in offspring of hypertensive pregnancies
GZ Yu, S Reilly, AJ Lewandowski, CYL Aye, LJ Simpson, LD Newton, ...
Hypertension 72 (4), 937-945, 2018
342018
Clades, clans, and reciprocal monophyly under neutral evolutionary models
S Zhu, JH Degnan, M Steel
Theoretical Population Biology, 2011
312011
Chamaeleo: an integrated evaluation platform for DNA storage
Z Ping, H Zhang, S Chen, M NI, X XU, S ZHU, Y SHEN
Synthetic Biology Journal 2 (3), 412, 2021
112021
Ancient Admixture into Africa from the ancestors of non-Africans
CB Cole, SJ Zhu, I Mathieson, K Prüfer, G Lunter
bioRxiv, 2020.06. 01.127555, 2020
112020
Clades and clans: a comparison study of two evolutionary models
S Zhu, C Than, T Wu
Journal of Mathematical Biology 71, 99-124, 2015
102015
Demographic inference from multiple whole genomes using a particle filter for continuous Markov jump processes
D Henderson, S Zhu, CB Cole, G Lunter
Plos one 16 (3), e0247647, 2021
62021
Chamaeleo: a robust library for DNA storage coding schemes
Z Ping, H Zhang, S Chen, Q Zhuang, SJ Zhu, Y Shen
bioRxiv, 2020.01. 02.892588, 2020
62020
Does random tree puzzle produce Yule–Harding trees in the many-taxon limit?
S Zhu, M Steel
Mathematical Biosciences 243 (1), 109-116, 2013
62013
Bioactive lipid lysophosphatidic acid species are associated with disease progression in idiopathic pulmonary fibrosis
M Neighbors, Q Li, SJ Zhu, J Liu, WR Wong, G Jia, W Sandoval, GW Tew
Journal of Lipid Research 64 (6), 2023
42023
Carbon-based archiving: current progress and future prospects of DNA-based data storage. GigaScience 8
Z Ping, D MA, X HUANG, S CHEN, L LIU, F GUO, SJ ZHU, Y SHEN
Oxford University Press (OUP) 8 (6), 2019
42019
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Artikler 1–20