Pedro G. Ferreira

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Roderic GuigoProfessor of Bioinformatics, Center for Genomic Regulation, Universitat Pompeu FabraVerified email at crg.cat
Emmanouil Dermitzakis, Manolis Der...VP Computational Biology, GSKVerified email at gsk.com
Michael SammethInstitute of Biophysics Carlos Chagas Filho (IBCCF), Federal University of Rio de Janeiro (UFRJ)Verified email at sammeth.net
Tuuli LappalainenSciLifeLab, KTH Royal Institute of Technology & New York Genome CenterVerified email at nygenome.org
Paulo J. AzevedoUniversidade do Minho, Departamento de Informática, INESC-TecVerified email at di.uminho.pt
Marta MeléGroup Leader at Barcelona Supercomputing CenterVerified email at bsc.es
Dmitri PervouchineSkolkovo Institute for Science and TechnologyVerified email at skoltech.ru
Jean MonlongUC Santa Cruz Genomics Institute, University of California, Santa CruzVerified email at mail.mcgill.ca
Ronnie AlvesInstituto Tecnológico Vale (ITV)Verified email at itv.org
Orlando BeloAssociate Professor with Habilitation, University of MinhoVerified email at di.uminho.pt
Sarah DjebaliIRSD, INSERM U1220, ToulouseVerified email at inserm.fr
Rory JohnsonUniversity College DublinVerified email at ucd.ie
Abel SousaAstraZenecaVerified email at astrazeneca.com
Rui M M BritoAssociate Professor, Chemistry Department, University of CoimbraVerified email at ci.uc.pt
Cândida G. SilvaCoimbra Chemistry Centre, Department of Chemistry, University of CoimbraVerified email at qui.uc.pt
Seirian SumnerUniversity College London, UKVerified email at ucl.ac.uk
Joel RibeiroResearcher at INESC Technology and Science - Associate LaboratoryVerified email at inesctec.pt

Pedro G. Ferreira

Department of Computer Science, Faculty of Sciences University of Porto; INESC-TEC

Verified email at fc.up.pt - Homepage

Computational biology bioinformatics Data Mining Machine Learning


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57-74, 2012	12855	2012
Landscape of transcription in human cells S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ... Nature 489 (7414), 101-108, 2012	5106	2012
The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans GTEx Consortium Science 348 (6235), 648-660, 2015	4173	2015
Genetic effects on gene expression across human tissues GTE Consortium Nature 550 (7675), 204-213, 2017	2855*	2017
Transcriptome and genome sequencing uncovers functional variation in humans T Lappalainen, M Sammeth, MR Friedländer, P AC‘t Hoen, J Monlong, ... Nature 501 (7468), 506-511, 2013	1924	2013
The GTEx Consortium atlas of genetic regulatory effects across human tissues GTEx Consortium Science 369 (6509), 1318-1330, 2020	1698	2020
The human transcriptome across tissues and individuals M Melé, PG Ferreira, F Reverter, DS DeLuca, J Monlong, M Sammeth, ... Science 348 (6235), 660-665, 2015	1210	2015
Dynamic landscape and regulation of RNA editing in mammals MH Tan, Q Li, R Shanmugam, R Piskol, J Kohler, AN Young, KI Liu, ... Nature 550 (7675), 249-254, 2017	456	2017
Effect of predicted protein-truncating genetic variants on the human transcriptome MA Rivas, M Pirinen, DF Conrad, M Lek, EK Tsang, KJ Karczewski, ... Science 348 (6235), 666-669, 2015	300	2015
Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories PAC t Hoen, MR Friedländer, J Almlöf, M Sammeth, I Pulyakhina, ... Nature biotechnology 31 (11), 1015-1022, 2013	249	2013
Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia PG Ferreira, P Jares, D Rico, G Gómez-López, A Martínez-Trillos, ... Genome research 24 (2), 212-226, 2014	236	2014
The effects of death and post-mortem cold ischemia on human tissue transcriptomes PG Ferreira, M Muñoz-Aguirre, F Reverter, CPS Godinho, A Sousa, ... Nature communications 9 (1), 1-15, 2018	211	2018
Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies S Patalano, A Vlasova, C Wyatt, P Ewels, F Camara, PG Ferreira, ... Proceedings of the National Academy of Sciences 112 (45), 13970-13975, 2015	193	2015
A quantitative proteome map of the human body L Jiang, M Wang, S Lin, R Jian, X Li, J Chan, G Dong, H Fang, ... Cell 183 (1), 269-283. e19, 2020	189	2020
Synchronized age-related gene expression changes across multiple tissues in human and the link to complex diseases J Yang, T Huang, F Petralia, Q Long, B Zhang, C Argmann, Y Zhao, ... Scientific reports 5 (1), 1-16, 2015	182	2015
CPEB1 coordinates alternative 3′-UTR formation with translational regulation FA Bava, C Eliscovich, PG Ferreira, B Miñana, C Ben-Dov, R Guigó, ... Nature 495 (7439), 121-125, 2013	176	2013
Transcriptome analyses of primitively eusocial wasps reveal novel insights into the evolution of sociality and the origin of alternative phenotypes PG Ferreira, S Patalano, R Chauhan, R Ffrench-Constant, T Gabaldon, ... Genome biology 14 (2), R20, 2013	170	2013
Mitotic cell-cycle progression is regulated by CPEB1 and CPEB4-dependent translational control I Novoa, J Gallego, PG Ferreira, R Mendez Nature cell biology 12 (5), 447-456, 2010	168	2010
Putative cis-regulatory drivers in colorectal cancer H Ongen, CL Andersen, JB Bramsen, B Oster, MH Rasmussen, ... Nature 512 (7512), 87-90, 2014	156	2014
Co-expression networks reveal the tissue-specific regulation of transcription and splicing A Saha, Y Kim, ADH Gewirtz, B Jo, C Gao, IC McDowell, BE Engelhardt, ... Genome research 27 (11), 1843-1858, 2017	150	2017

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