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Markus Göker
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Genome sequence-based species delimitation with confidence intervals and improved distance functions
JP Meier-Kolthoff, AF Auch, HP Klenk, M Göker
BMC bioinformatics 14 (1), 1-14, 2013
43592013
Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison
AF Auch, M von Jan, HP Klenk, M Göker
Standards in genomic sciences 2 (1), 117-134, 2010
12802010
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy
JP Meier-Kolthoff, M Göker
Nature communications 10 (1), 1-10, 2019
9892019
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
5852017
List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
AC Parte, JS Carbasse, JP Meier-Kolthoff, LC Reimer, M Göker
International Journal of Systematic and Evolutionary Microbiology 70 (11), 5607, 2020
5332020
Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs
AF Auch, HP Klenk, M Göker
Standards in genomic sciences 2 (1), 142-148, 2010
5052010
Toward a novel multilocus phylogenetic taxonomy for the dermatophytes
GS de Hoog, K Dukik, M Monod, A Packeu, D Stubbe, M Hendrickx, ...
Mycopathologia 182 (1), 5-31, 2017
4922017
Taxonomic use of DNA G+ C content and DNA–DNA hybridization in the genomic age
JP Meier-Kolthoff, HP Klenk, M Göker
International journal of systematic and evolutionary microbiology 64 (Pt_2 …, 2014
4832014
When should a DDH experiment be mandatory in microbial taxonomy?
JP Meier-Kolthoff, M Göker, C Spröer, HP Klenk
Archives of Microbiology 195 (6), 413-418, 2013
4742013
Towards an integrated phylogenetic classification of the Tremellomycetes
XZ Liu, QM Wang, M Göker, M Groenewald, AV Kachalkin, HT Lumbsch, ...
Studies in mycology 81 (1), 85-147, 2015
3952015
Genome-based taxonomic classification of the phylum Actinobacteria
I Nouioui, L Carro, M García-López, JP Meier-Kolthoff, T Woyke, ...
Frontiers in microbiology, 2007, 2018
3942018
Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy
JP Meier-Kolthoff, RL Hahnke, J Petersen, C Scheuner, V Michael, ...
Standards in genomic sciences 9 (1), 1-19, 2014
3552014
En route to a genome-based classification of Archaea and Bacteria?
HP Klenk, M Göker
Systematic and applied microbiology 33 (4), 175-182, 2010
3132010
VICTOR: genome-based phylogeny and classification of prokaryotic viruses
JP Meier-Kolthoff, M Göker
Bioinformatics 33 (21), 3396-3404, 2017
2902017
Phylogenetic relationships of the downy mildews (Peronosporales) and related groups based on nuclear large subunit ribosomal DNA sequences
A Riethmuller, H Voglmayr, M Goker, M Weiß, F Oberwinkler
Mycologia 94 (5), 834-849, 2002
2772002
Comparative genomics of biotechnologically important yeasts
R Riley, S Haridas, KH Wolfe, MR Lopes, CT Hittinger, M Göker, ...
Proceedings of the National Academy of Sciences 113 (35), 9882-9887, 2016
2762016
Genomic insights into the taxonomic status of the Bacillus cereus group
Y Liu, Q Lai, M Göker, JP Meier-Kolthoff, M Wang, Y Sun, L Wang, Z Shao
Scientific reports 5 (1), 1-11, 2015
2652015
Phylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats
M Simon, C Scheuner, JP Meier-Kolthoff, T Brinkhoff, I Wagner-Döbler, ...
The ISME journal 11 (6), 1483-1499, 2017
2382017
opm: an R package for analysing OmniLog® phenotype microarray data
LAI Vaas, J Sikorski, B Hofner, A Fiebig, N Buddruhs, HP Klenk, M Göker
Bioinformatics 29 (14), 1823-1824, 2013
2192013
Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains
NC Kyrpides, P Hugenholtz, JA Eisen, T Woyke, M Göker, CT Parker, ...
PLoS biology 12 (8), e1001920, 2014
2182014
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