| Bayesian inference of gene expression states from single-cell RNA-seq data J Breda, M Zavolan, E van Nimwegen Nature Biotechnology 39 (8), 1008-1016, 2021 | 72 | 2021 |
| Tead transcription factors differentially regulate cortical development T Mukhtar, J Breda, A Grison, Z Karimaddini, P Grobecker, D Iber, ... Scientific reports 10 (1), 4625, 2020 | 45 | 2020 |
| Single‐cell mRNA profiling reveals the hierarchical response of mi RNA targets to mi RNA induction AJ Rzepiela, S Ghosh, J Breda, A Vina‐Vilaseca, AP Syed, AJ Gruber, ... Molecular systems biology 14 (8), e8266, 2018 | 24 | 2018 |
| Quantifying the strength of miRNA–target interactions J Breda, AJ Rzepiela, R Gumienny, E van Nimwegen, M Zavolan Methods 85, 90-99, 2015 | 24 | 2015 |
| Automated incorporation of pairwise dependency in transcription factor binding site prediction using dinucleotide weight tensors S Omidi, M Zavolan, M Pachkov, J Breda, S Berger, E van Nimwegen PLoS computational biology 13 (7), e1005176, 2017 | 14 | 2017 |
| Temporal and sequential transcriptional dynamics define lineage shifts in corticogenesis T Mukhtar, J Breda, MA Adam, M Boareto, P Grobecker, Z Karimaddini, ... The EMBO journal 41 (24), e111132, 2022 | 9 | 2022 |
| A novel approach to single‐cell analysis reveals intrinsic differences in immune marker expression in unstimulated BALB/c and C57BL/6 macrophages J Breda, A Banerjee, R Jayachandran, J Pieters, M Zavolan FEBS letters 596 (20), 2630-2643, 2022 | 3 | 2022 |
| The protooncogene Ski regulates the neuron-glia switch during development of the mammalian cerebral cortex A Grison, Z Karimaddini, J Breda, T Mukhtar, M Boareto, K Eschbach, ... bioRxiv, 2022.12. 16.520470, 2022 | | 2022 |
| Model-driven analysis of gene expression control J Breda University_of_Basel, 2020 | | 2020 |
