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Alexander Johansen
Alexander Johansen
Stanford University
Verificeret mail på stanford.edu
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SignalP 6.0 predicts all five types of signal peptides using protein language models
F Teufel, JJ Almagro Armenteros, AR Johansen, MH Gíslason, SI Pihl, ...
Nature biotechnology 40 (7), 1023-1025, 2022
13742022
DeepLoc 2.0: multi-label subcellular localization prediction using protein language models
V Thumuluri, JJ Almagro Armenteros, AR Johansen, H Nielsen, O Winther
Nucleic acids research 50 (W1), W228-W234, 2022
3052022
An introduction to deep learning on biological sequence data: examples and solutions
VI Jurtz, AR Johansen, M Nielsen, JJ Almagro Armenteros, H Nielsen, ...
Bioinformatics 33 (22), 3685-3690, 2017
1752017
Deep neural network-based decision network
AR Johansen, B McCann, J Bradbury, R Socher
US Patent 11,250,311, 2022
1572022
Epileptiform spike detection via convolutional neural networks
AR Johansen, J Jin, T Maszczyk, J Dauwels, SS Cash, MB Westover
International Conference on Acoustics, Speech and Signal Processing (IEEE …, 2016
1232016
Probability-based guider
AR Johansen, B McCann, J Bradbury, R Socher
US Patent 11,354,565, 2022
1012022
Prediction of GPI-anchored proteins with pointer neural networks
MH Gíslason, H Nielsen, JJA Armenteros, AR Johansen
Current Research in Biotechnology 3, 6-13, 2021
922021
A deep learning approach to adherence detection for type 2 diabetics
A Mohebbi, TB Aradóttir, AR Johansen, H Bengtsson, M Fraccaro, ...
Engineering in Medicine and Biology Society (IEEE-EMBC), 2896-2899, 2017
822017
Neural Arithmetic Units
A Madsen, AR Johansen
International Conference on Learning Representations (ICLR), 2020
562020
NetSolP: predicting protein solubility in Escherichia coli using language models
V Thumuluri, HM Martiny, JJ Almagro Armenteros, J Salomon, H Nielsen, ...
Bioinformatics 38 (4), 941-946, 2022
342022
Short Term Blood Glucose Prediction based on Continuous Glucose Monitoring Data
A Mohebbi, AR Johansen, N Hansen, PE Christensen, JM Tarp, ...
Engineering in Medicine and Biology Society (IEEE-EMBC), 2020
272020
Deep recurrent conditional random field network for protein secondary prediction
AR Johansen, CK Sønderby, SK Sønderby, O Winther
Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB), 73-78, 2017
262017
Language modelling for biological sequences–curated datasets and baselines
JJ Almagro Armenteros, AR Johansen, O Winther, H Nielsen
BioRxiv, 2020.03. 09.983585, 2020
222020
Learning when to skim and when to read
AR Johansen, R Socher
Workshop on Representation Learning for NLP (ACL), 2017
152017
GraphPart: homology partitioning for biological sequence analysis
F Teufel, MH Gíslason, JJ Almagro Armenteros, AR Johansen, O Winther, ...
NAR genomics and bioinformatics 5 (4), lqad088, 2023
142023
CliniDigest: a case study in large language model based large-scale summarization of clinical trial descriptions
R White, T Peng, P Sripitak, A Rosenberg Johansen, M Snyder
Proceedings of the 2023 ACM Conference on Information Technology for Social …, 2023
102023
Measuring Arithmetic Extrapolation Performance
A Madsen, AR Johansen
Conference on Neural Information Processing Systems (SEDL | NeurIPS), 2019
92019
Deep protein representations enable recombinant protein expression prediction
HM Martiny, JJA Armenteros, AR Johansen, J Salomon, H Nielsen
Computational Biology and Chemistry 95, 107596, 2021
82021
Neural Machine Translation with Characters and Hierarchical Encoding
AR Johansen, JM Hansen, EK Obeid, CK Sønderby, O Winther
Symposium on Recurrent Neural Networks (NIPS), 2016
82016
Deep neural network-based decision network
AR Johansen, B McCann, J Bradbury, R Socher
US Patent App. 17/670,368, 2022
12022
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