Thomas Hamelryck
TitelCiteret afÅr
Biopython: freely available Python tools for computational molecular biology and bioinformatics
PJA Cock, T Antao, JT Chang, BA Chapman, CJ Cox, A Dalke, I Friedberg, ...
Bioinformatics 25 (11), 1422-1423, 2009
16252009
Legume lectin structure
R Loris, T Hamelryck, J Bouckaert, L Wyns
Biochimica et biophysica acta (BBA)-Protein structure and molecular …, 1998
6141998
PDB file parser and structure class implemented in Python
T Hamelryck, B Manderick
Bioinformatics 19 (17), 2308-2310, 2003
1472003
A generative, probabilistic model of local protein structure
W Boomsma, KV Mardia, CC Taylor, J Ferkinghoff-Borg, A Krogh, ...
Proceedings of the National Academy of Sciences 105 (26), 8932-8937, 2008
1442008
The crystallographic structure of phytohemagglutinin-L
TW Hamelryck, MH Dao-Thi, F Poortmans, MJ Chrispeels, L Wyns, ...
Journal of Biological Chemistry 271 (34), 20479-20485, 1996
1411996
Carbohydrate binding, quaternary structure and a novel hydrophobic binding site in two legume lectin oligomers fromDolichos biflorus
TW Hamelryck, R Loris, J Bouckaert, MH Dao-Thi, G Strecker, A Imberty, ...
Journal of molecular biology 286 (4), 1161-1177, 1999
1351999
Sampling realistic protein conformations using local structural bias
T Hamelryck, JT Kent, A Krogh
PLoS Computational Biology 2 (9), e131, 2006
1112006
An amino acid has two sides: a new 2D measure provides a different view of solvent exposure
T Hamelryck
Proteins: Structure, Function, and Bioinformatics 59 (1), 38-48, 2005
1082005
Novel structures of plant lectins and their complexes with carbohydrates
J Bouckaert, T Hamelryck, L Wyns, R Loris
Current opinion in structural biology 9 (5), 572-577, 1999
971999
A probabilistic model of RNA conformational space
J Frellsen, I Moltke, M Thiim, KV Mardia, J Ferkinghoff-Borg, T Hamelryck
PLoS computational biology 5 (6), e1000406, 2009
912009
NMR, molecular modeling, and crystallographic studies of lentil lectin-sucrose interaction
F Casset, T Hamelryck, R Loris, JR Brisson, C Tellier, MH Dao-Thi, ...
Journal of Biological Chemistry 270 (43), 25619-25628, 1995
681995
Potentials of mean force for protein structure prediction vindicated, formalized and generalized
T Hamelryck, M Borg, M Paluszewski, J Paulsen, J Frellsen, C Andreetta, ...
PloS one 5 (11), e13714, 2010
672010
Beyond rotamers: a generative, probabilistic model of side chains in proteins
T Harder, W Boomsma, M Paluszewski, J Frellsen, KE Johansson, ...
BMC bioinformatics 11 (1), 306, 2010
622010
The crystal structures of Man (α1–3) Man (α1-O) Me and Man (α1–6) Man (α1-O) Me in complex with concanavalin A
J Bouckaert, TW Hamelryck, L Wyns, R Loris
Journal of Biological Chemistry 274 (41), 29188-29195, 1999
571999
An evolutionary method for learning HMM structure: prediction of protein secondary structure
KJ Won, T Hamelryck, A Prügel-Bennett, A Krogh
BMC bioinformatics 8 (1), 357, 2007
542007
Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models
K Stovgaard, C Andreetta, J Ferkinghoff-Borg, T Hamelryck
BMC bioinformatics 11 (1), 429, 2010
502010
The role of weak protein-protein interactions in multivalent lectin-carbohydrate binding: crystal structure of cross-linked FRIL
TW Hamelryck, JG Moore, MJ Chrispeels, R Loris, L Wyns
Journal of molecular biology 299 (4), 875-883, 2000
442000
Weak protein-protein interactions in lectins: the crystal structure of a vegetative lectin from the legume Dolichos biflorus
L Buts, MH Dao-Thi, R Loris, L Wyns, M Etzler, T Hamelryck
Journal of molecular biology 309 (1), 193-201, 2001
432001
Probabilistic determination of native state ensembles of proteins
S Olsson, BR Vögeli, A Cavalli, W Boomsma, J Ferkinghoff-Borg, ...
Journal of Chemical Theory and Computation 10 (8), 3484-3491, 2014
372014
Inference of structure ensembles of flexible biomolecules from sparse, averaged data
S Olsson, J Frellsen, W Boomsma, KV Mardia, T Hamelryck
PloS one 8 (11), e79439, 2013
372013
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Artikler 1–20