Thomas Hamelryck

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Remy LorisHoogleraar, VUBVerificeret mail på vub.be
Jesper Ferkinghoff-BorgAssociate Professor, Research Director, Novo Nordisk A/SVerificeret mail på novonordisk.com
Wouter BoomsmaProfessor, Department of Computer Science, University of CopenhagenVerificeret mail på di.ku.dk
Kanti MardiaSENIOR RESARCH PROFESSOR ,UNIVERSITY OF LEEDS AND UNIVERSITY OF OXFORDVerificeret mail på leeds.ac.uk
Jes FrellsenAssociate Professor, Technical University of Denmark (DTU)Verificeret mail på dtu.dk
Julie BouckaertUnite de Glycobiologie Structurale et FonctionelleVerificeret mail på univ-lille.fr
Iddo FriedbergAssociate Professor of Bioinformatics, Iowa State UniversityVerificeret mail på iastate.edu
Tiago AntaoUniversity of MontanaVerificeret mail på cam.ac.uk
Peter CockUniversity of StrathclydeVerificeret mail på strath.ac.uk
Christian AndreettaUniv. of Copenhagen, Denmark, and Uni Computing, Uni Research, NorwayVerificeret mail på uni.no
Simon OlssonChalmers University of TechnologyVerificeret mail på chalmers.se
Anders KroghDepartment of Computer Science and Center for Health Data Science, University of CopenhagenVerificeret mail på di.ku.dk
Sandro BottaroPeptoneVerificeret mail på peptone.io
Tim HarderResearch Scientist at Philips ResearchVerificeret mail på philips.com
Kristoffer Enøe JohanssonDepartment of Biology, University of CopenhagenVerificeret mail på bio.ku.dk
Charles C TaylorUniversity of LeedsVerificeret mail på maths.leeds.ac.uk
Kresten Lindorff-LarsenLinderstrøm-Lang Centre for Protein Science, Department of Biology, University of CopenhagenVerificeret mail på bio.ku.dk
Lubomir D. AntonovPhD Fellow, University of CopenhagenVerificeret mail på binf.ku.dk
Jan H. JensenUniversity of CopenhagenVerificeret mail på chem.ku.dk
Kasper StovgaardBioinformatics Centre, University of CopenhagenVerificeret mail på ihfood.dk

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Thomas Hamelryck

Dpt. of computer science / Dpt. of biology, University of Copenhagen

Verificeret mail på bio.ku.dk - Startside

Deep probabilistic programming Bayesian statistics Bioinformatics


Titel Sortér efter henvisninger Sortér efter årstal Sortér efter titel	Citeret af Citeret af	År
Biopython: freely available Python tools for computational molecular biology and bioinformatics PJA Cock, T Antao, JT Chang, BA Chapman, CJ Cox, A Dalke, I Friedberg, ... Bioinformatics 25 (11), 1422, 2009	5185	2009
Legume lectin structure R Loris, T Hamelryck, J Bouckaert, L Wyns Biochimica et biophysica acta (BBA)-Protein structure and molecular …, 1998	773	1998
PDB file parser and structure class implemented in Python T Hamelryck, B Manderick Bioinformatics 19 (17), 2308-2310, 2003	292	2003
A generative, probabilistic model of local protein structure W Boomsma, KV Mardia, CC Taylor, J Ferkinghoff-Borg, A Krogh, ... Proceedings of the National Academy of Sciences 105 (26), 8932-8937, 2008	210	2008
An amino acid has two sides: a new 2D measure provides a different view of solvent exposure T Hamelryck Proteins: Structure, Function, and Bioinformatics 59 (1), 38-48, 2005	181	2005
Carbohydrate binding, quaternary structure and a novel hydrophobic binding site in two legume lectin oligomers fromDolichos biflorus TW Hamelryck, R Loris, J Bouckaert, MH Dao-Thi, G Strecker, A Imberty, ... Journal of molecular biology 286 (4), 1161-1177, 1999	167	1999
The crystallographic structure of phytohemagglutinin-L TW Hamelryck, MH Dao-Thi, F Poortmans, MJ Chrispeels, L Wyns, ... Journal of Biological Chemistry 271 (34), 20479-20485, 1996	162	1996
Sampling realistic protein conformations using local structural bias T Hamelryck, JT Kent, A Krogh PLoS Computational Biology 2 (9), e131, 2006	155	2006
A probabilistic model of RNA conformational space J Frellsen, I Moltke, M Thiim, KV Mardia, J Ferkinghoff-Borg, T Hamelryck PLoS computational biology 5 (6), e1000406, 2009	127	2009
Novel structures of plant lectins and their complexes with carbohydrates J Bouckaert, T Hamelryck, L Wyns, R Loris Current opinion in structural biology 9 (5), 572-577, 1999	119	1999
Potentials of mean force for protein structure prediction vindicated, formalized and generalized T Hamelryck, M Borg, M Paluszewski, J Paulsen, J Frellsen, C Andreetta, ... PloS one 5 (11), e13714, 2010	102	2010
Beyond rotamers: a generative, probabilistic model of side chains in proteins T Harder, W Boomsma, M Paluszewski, J Frellsen, KE Johansson, ... BMC bioinformatics 11, 1-13, 2010	82	2010
NMR, molecular modeling, and crystallographic studies of lentil lectin-sucrose interaction F Casset, T Hamelryck, R Loris, JR Brisson, C Tellier, MH Dao-Thi, ... Journal of Biological Chemistry 270 (43), 25619-25628, 1995	82	1995
An evolutionary method for learning HMM structure: prediction of protein secondary structure KJ Won, T Hamelryck, A Prügel-Bennett, A Krogh BMC bioinformatics 8, 1-13, 2007	71	2007
Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models K Stovgaard, C Andreetta, J Ferkinghoff-Borg, T Hamelryck BMC bioinformatics 11, 1-14, 2010	70	2010
The crystal structures of Man (α1–3) Man (α1-O) Me and Man (α1–6) Man (α1-O) Me in complex with concanavalin A J Bouckaert, TW Hamelryck, L Wyns, R Loris Journal of Biological Chemistry 274 (41), 29188-29195, 1999	69	1999
Bayesian inference of protein ensembles from SAXS data LD Antonov, S Olsson, W Boomsma, T Hamelryck Physical Chemistry Chemical Physics 18 (8), 5832-5838, 2016	62	2016
Inference of structure ensembles of flexible biomolecules from sparse, averaged data S Olsson, J Frellsen, W Boomsma, KV Mardia, T Hamelryck PloS one 8 (11), e79439, 2013	61	2013
Bayesian methods in structural bioinformatics T Hamelryck, K Mardia, J Ferkinghoff-Borg Springer, 2012	56	2012
Weak protein-protein interactions in lectins: the crystal structure of a vegetative lectin from the legume Dolichos biflorus L Buts, MH Dao-Thi, R Loris, L Wyns, M Etzler, T Hamelryck Journal of Molecular Biology 309 (1), 193-201, 2001	52	2001

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