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Thomas Hamelryck
Thomas Hamelryck
Dpt. of computer science / Dpt. of biology, University of Copenhagen
Verificeret mail på bio.ku.dk - Startside
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Biopython: freely available Python tools for computational molecular biology and bioinformatics
PJA Cock, T Antao, JT Chang, BA Chapman, CJ Cox, A Dalke, I Friedberg, ...
Bioinformatics 25 (11), 1422, 2009
48662009
Legume lectin structure
R Loris, T Hamelryck, J Bouckaert, L Wyns
Biochimica et biophysica acta (BBA)-Protein structure and molecular …, 1998
7701998
PDB file parser and structure class implemented in Python
T Hamelryck, B Manderick
Bioinformatics 19 (17), 2308-2310, 2003
2852003
A generative, probabilistic model of local protein structure
W Boomsma, KV Mardia, CC Taylor, J Ferkinghoff-Borg, A Krogh, ...
Proceedings of the National Academy of Sciences 105 (26), 8932-8937, 2008
2052008
An amino acid has two sides: a new 2D measure provides a different view of solvent exposure
T Hamelryck
Proteins: Structure, Function, and Bioinformatics 59 (1), 38-48, 2005
1802005
Carbohydrate binding, quaternary structure and a novel hydrophobic binding site in two legume lectin oligomers fromDolichos biflorus
TW Hamelryck, R Loris, J Bouckaert, MH Dao-Thi, G Strecker, A Imberty, ...
Journal of molecular biology 286 (4), 1161-1177, 1999
1671999
The crystallographic structure of phytohemagglutinin-L
TW Hamelryck, MH Dao-Thi, F Poortmans, MJ Chrispeels, L Wyns, ...
Journal of Biological Chemistry 271 (34), 20479-20485, 1996
1631996
Sampling realistic protein conformations using local structural bias
T Hamelryck, JT Kent, A Krogh
PLoS Computational Biology 2 (9), e131, 2006
1512006
A probabilistic model of RNA conformational space
J Frellsen, I Moltke, M Thiim, KV Mardia, J Ferkinghoff-Borg, T Hamelryck
PLoS computational biology 5 (6), e1000406, 2009
1242009
Novel structures of plant lectins and their complexes with carbohydrates
J Bouckaert, T Hamelryck, L Wyns, R Loris
Current opinion in structural biology 9 (5), 572-577, 1999
1171999
Potentials of mean force for protein structure prediction vindicated, formalized and generalized
T Hamelryck, M Borg, M Paluszewski, J Paulsen, J Frellsen, C Andreetta, ...
PloS one 5 (11), e13714, 2010
1012010
Beyond rotamers: a generative, probabilistic model of side chains in proteins
T Harder, W Boomsma, M Paluszewski, J Frellsen, KE Johansson, ...
BMC bioinformatics 11, 1-13, 2010
842010
NMR, molecular modeling, and crystallographic studies of lentil lectin-sucrose interaction
F Casset, T Hamelryck, R Loris, JR Brisson, C Tellier, MH Dao-Thi, ...
Journal of Biological Chemistry 270 (43), 25619-25628, 1995
801995
An evolutionary method for learning HMM structure: prediction of protein secondary structure
KJ Won, T Hamelryck, A Prügel-Bennett, A Krogh
BMC bioinformatics 8, 1-13, 2007
712007
The crystal structures of Man (α1–3) Man (α1-O) Me and Man (α1–6) Man (α1-O) Me in complex with concanavalin A
J Bouckaert, TW Hamelryck, L Wyns, R Loris
Journal of Biological Chemistry 274 (41), 29188-29195, 1999
691999
Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models
K Stovgaard, C Andreetta, J Ferkinghoff-Borg, T Hamelryck
BMC bioinformatics 11, 1-14, 2010
682010
Inference of structure ensembles of flexible biomolecules from sparse, averaged data
S Olsson, J Frellsen, W Boomsma, KV Mardia, T Hamelryck
PloS one 8 (11), e79439, 2013
612013
Bayesian inference of protein ensembles from SAXS data
LD Antonov, S Olsson, W Boomsma, T Hamelryck
Physical Chemistry Chemical Physics 18 (8), 5832-5838, 2016
582016
Bayesian methods in structural bioinformatics
T Hamelryck, K Mardia, J Ferkinghoff-Borg
Springer, 2012
562012
The role of weak protein-protein interactions in multivalent lectin-carbohydrate binding: crystal structure of cross-linked FRIL
TW Hamelryck, JG Moore, MJ Chrispeels, R Loris, L Wyns
Journal of Molecular Biology 299 (4), 875-883, 2000
532000
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